Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is yajQ [C]
Identifier: 41410161
GI number: 41410161
Start: 4525253
End: 4525744
Strand: Reverse
Name: yajQ [C]
Synonym: MAP4063c
Alternate gene names: 41410161
Gene position: 4525744-4525253 (Counterclockwise)
Preceding gene: 41410162
Following gene: 41410160
Centisome position: 93.7
GC content: 63.62
Gene sequence:
>492_bases ATGGCGGACTCATCGTTCGACATCGTCAGCAAAGTGGACCGCCAGGAGGTCGACAACGCGCTCAACCAGGCCGCCAAGGA GCTGGCCACCCGCTTCGACTTCCGCGGCACCGACACCACCATCGCCTGGAAGGGCGACGAGGCTATCGAGCTGACGTCGT CCACCGGGGAACGCGTCAAGGCGGCCGTCGACGTCTTCAAGGAGAAACTGATCCGCCGGGACATCTCCATGAAGGCCTTC GACGCCGGCGAACCCCAGGCCTCCGGCAAGACCTACAAGGTCAACGGCACCCTCAAGCAGGGCATCAGCAGCGAGAGCGC GAAGAAGATCACCAAGCTGATCCGCGACGAGGGCCCCAAGGGCGTCAAAACCCAGATCCAGGGCGACGAGATCCGGGTGA GCAGCAAAAAGCGCGACGACCTGCAGGCCGTCATCGCAATGCTCAAGCAGGCCGACCTGGACGTGGCGCTGCAGTTCGTC AACTACCGGTGA
Upstream 100 bases:
>100_bases CCGCTCCCATTGGCCGCTCGGGCAACCTGCCGCCAGACAGGTTACAACGAGCGAGTAGACAAAGCACAAACGCCTGTCAC TCGATGAAAGGACGGAATGC
Downstream 100 bases:
>100_bases TTCCCGGCGCACGAACGTGAGCGCGGCCGTTCACTAGCCCAACCAACCGGTGGGTCTCTACCCTGGTGACCAGTCCCACA ATTCGAGCGAGGTTCGCGAT
Product: putative nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MADSSFDIVSKVDRQEVDNALNQAAKELATRFDFRGTDTTIAWKGDEAIELTSSTGERVKAAVDVFKEKLIRRDISMKAF DAGEPQASGKTYKVNGTLKQGISSESAKKITKLIRDEGPKGVKTQIQGDEIRVSSKKRDDLQAVIAMLKQADLDVALQFV NYR
Sequences:
>Translated_163_residues MADSSFDIVSKVDRQEVDNALNQAAKELATRFDFRGTDTTIAWKGDEAIELTSSTGERVKAAVDVFKEKLIRRDISMKAF DAGEPQASGKTYKVNGTLKQGISSESAKKITKLIRDEGPKGVKTQIQGDEIRVSSKKRDDLQAVIAMLKQADLDVALQFV NYR >Mature_162_residues ADSSFDIVSKVDRQEVDNALNQAAKELATRFDFRGTDTTIAWKGDEAIELTSSTGERVKAAVDVFKEKLIRRDISMKAFD AGEPQASGKTYKVNGTLKQGISSESAKKITKLIRDEGPKGVKTQIQGDEIRVSSKKRDDLQAVIAMLKQADLDVALQFVN YR
Specific function: Unknown
COG id: COG1666
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0234 family [H]
Homologues:
Organism=Escherichia coli, GI87081737, Length=161, Percent_Identity=45.3416149068323, Blast_Score=127, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007551 [H]
Pfam domain/function: PF04461 DUF520 [H]
EC number: NA
Molecular weight: Translated: 18014; Mature: 17882
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSSFDIVSKVDRQEVDNALNQAAKELATRFDFRGTDTTIAWKGDEAIELTSSTGERVK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCHHHHH AAVDVFKEKLIRRDISMKAFDAGEPQASGKTYKVNGTLKQGISSESAKKITKLIRDEGPK HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCHHHHHHHHHHHCCCCC GVKTQIQGDEIRVSSKKRDDLQAVIAMLKQADLDVALQFVNYR CCEEEECCCEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHCCC >Mature Secondary Structure ADSSFDIVSKVDRQEVDNALNQAAKELATRFDFRGTDTTIAWKGDEAIELTSSTGERVK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCHHHHH AAVDVFKEKLIRRDISMKAFDAGEPQASGKTYKVNGTLKQGISSESAKKITKLIRDEGPK HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCHHHHHHHHHHHCCCCC GVKTQIQGDEIRVSSKKRDDLQAVIAMLKQADLDVALQFVNYR CCEEEECCCEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]