| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41410096
Identifier: 41410096
GI number: 41410096
Start: 4458338
End: 4461004
Strand: Reverse
Name: 41410096
Synonym: MAP3998c
Alternate gene names: NA
Gene position: 4461004-4458338 (Counterclockwise)
Preceding gene: 41410097
Following gene: 41410095
Centisome position: 92.36
GC content: 68.58
Gene sequence:
>2667_bases ATGGCGCCGCTGGCGTGTGATCCCACCGCCCTAGACCACGCCGGCGCCACCGTGGTGGCCGCCGGTGAGTCGTTGGGTTC GGTGATCTCGACCTTGACGGCGGCGCTGGCCGGCACCTCCGGGATGGCCGGTGACGATCCGGTGGGCGCCGCGCTTGGCC GCCGCTACGACGGCGCGGCGGCCAAGTTGATCCAGGCGATGGCCGACACCCGGAATGGGTTGTGCAGCATCGGCGATGGG GTGCGGATGTCGGCGCACAACTACGCGGTGGCCGAGGCGATGTCGGACCTGGCGGGCCGGGCCTCCGCCCTGCCGGCACC CCAGGTGACCGGACCGTTGACGGTCGGGGCGCCGCCGTCGGCGGTGGGTCACGGCAGCGGCGCCCCGGCCGGCTGGGGCT GGGTGGCCCCGTATATCGGGATGATCTGGCCCACCGGCGATTCGGCGAAGTTGCGGGCCGCCGCGGCGGCCTGGGCCACC GCCGGTGCCAACTTCATGGCCGCCGAGACCGCGGCCGGGGGCGGAACGATGGCAGCCATTGGCGCACAACAGATTCCGGA GGGCGCCGCGATCAACAAGGCGCTGGCCGACGCCTCCAGCGCCACGGCCGACGTGGCGCGGCAATGCCAGACGATCGCCG CGCAGCTCAACAGCTATGCGGCCAAGGTCGACCAGGTGCACGCGGCGATCCTGGATCTGTTGTCGCGCATCTGCGATCCG CTGACCGGGATCAAAGAGGTCTGGGATCTGCTGACCGACGAAGACGAAGACGAGATCAAGAAGATCGCCGACGACATTCG CACGGTGGTCGACAACTTCGGCCGGGAAGCCGACACGCTGGGCGGCCAGATCGAGGCCACGGTGTCCGCGGTTGCCGCGG CCACAGAGAACATGAGCCATTGGGCCGGTAAGGAGTGGGACCACTTCTTGCACGGGACGCCGGTCGGCAGGGCGCTCAAC CAGGTGGGCCAGGCCTTCAAAGGCGTCGGTGAGGAAGGCTGGGGATTTCTCAAAGGGCTGTATGAGGTCAGCCCCAACCG GATGCTGCTGGATCCCGTGGGTTACGGCAAAACCATGGCCGGCATGGTTGAAGGGGCCGGCACGCTCGTCGGTCTGGGGC CCGACGGCGTGCCGGGAGCGTTCGACGCGTGGAAGGCGCTGGGCAAGGACGTCACGCACTGGGACGAGTGGGGCTCGAAT CCGGCCGAGGCCCTCGGGAAGTCCACTTTCGACGTGGCGACGTTGGCCTTGCCCGGCGGGCCGCTGTCCAAGCTGGGCAA ATTCGGGCACACCGCCGCCGATGCGCTGAAAGGGCTGAAGAAACCGCCCGGGGTTCCCAAGCCTCCGGAGGTCAAGCCCC CGGCCGCGCCCAAAGCACCGGACTCGGGCCAGCCGGCGCCTTCGGGAAAGCCGGGGCCGGTCGCGCCCTCGGGGAAGCCG GCGCCCGGGCCGGCCGACGGTCCGCTGCCGCACAGCCCGACCGAGTCCAAGCCGCCGGCTGGCGGGACACCCCCGGCCGC TGAGCCGCCCAAGCCGACCGCCGCGCCGCACAGCGGCGAACCGAAACCCATTGCGACGCCGCCGGAATCGGTCGGCAAGC CAGTGACGCCCGCGCCGGCCGAGGGCGCGCCAGCTCAACCGCACGAGCCCGTTCCCGCCCACGCGCCGGCGTCCCCCGGC GAACCTCTGGCCACGCCGGCTCCCGCTGCGGCGGTACCCGCGGCTGCGGCGGCGCCTGCGTCCGCTCCAGCACCCGCGGC CGCGGCGGCGGCGCCCGTTCCATCGGCGTCCTCGGTCCCGATGGGCGGCGGCGCGCCTGCCGAAACACCTTCCGGTCTAG GTGATGTGCCTCATGGCGGGGAGCCGGGCGCTCATCCCGTCGAGCCGCCGCATGATGGCGCTCCCCACGTGCCCGGCGGC GGAGATGGGCCATACCATCCTGGTGATGGCGGTCCCCATGGACCCGGCGACGGACATCCCCTGGCCGATGGCAGCGGGCC GCATCAACCTGGCGGTCATCACCCGCCTGGCGACGGCGATCGACCGCCCGGATCGCACCCGCCACACGACGGCGCGCCTC CCGATGAACCCGCCGACGGACATCCGCCAGAGATCCCCACCCCATCGGATTTACCGCCTTGGCACCAGGCGCAACTTGCG CTCGCGGAATCACCTGAGAAACTCGTCAAGGATCTCATAGAGCACGGCTGCCCTCGAGAACTTGCCGAATCAGCCGGGGC GAATAGCCCTTATGCGGGAATGACCGCGCAAGAAATTTTGAATAAATGGTGGGACCCTGCGACTGGGACGTGGGACTGGC CAAAAGTGGAAGGGTTCGCCGACGGCATATACAAAACTGCTCGCAGCATTCCCAAAGATGCGTGGCTGGACAGGATTGGA GAGGTCAGCGACGCTAAAGGTGATTTCATGGGCGCTGTCGGTGATAGCTATCCGCACCGCGGCCTGGCACCTGGTTCATC TGGCGATTACAATCGGTTCCACGGCACAGGTAAAGAATTGCCCGAAGGTTGGGAAGTCAGATACGGCGAAGTTGGCGACG CATTTGGCCAGCCAGGGGGCGGCACACAATGGGTAGTAATTGACAAAAACAAGAAGACTGTGCTGATAAAGTGGTTAATC GAGAACGGCTACCTGGATTGGGGATAG
Upstream 100 bases:
>100_bases ATGCGCGAGGCGCTGGCGCAGCTCGGCAAGGCGGCCTCGACCGCGCACGGCAACTACACCGGGGCGATGTCGAAGAATCT CGGCATGTGGTCGTGACCCG
Downstream 100 bases:
>100_bases TGGGCGAGCACAGAGAGGTCCTGCAGAGTTGGCTATGAATCTCGATGCAGAAGTTGGATTCGCTGATGCAATCAAGCATT ACAGCTTCTGGCGCAAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 888; Mature: 887
Protein sequence:
>888_residues MAPLACDPTALDHAGATVVAAGESLGSVISTLTAALAGTSGMAGDDPVGAALGRRYDGAAAKLIQAMADTRNGLCSIGDG VRMSAHNYAVAEAMSDLAGRASALPAPQVTGPLTVGAPPSAVGHGSGAPAGWGWVAPYIGMIWPTGDSAKLRAAAAAWAT AGANFMAAETAAGGGTMAAIGAQQIPEGAAINKALADASSATADVARQCQTIAAQLNSYAAKVDQVHAAILDLLSRICDP LTGIKEVWDLLTDEDEDEIKKIADDIRTVVDNFGREADTLGGQIEATVSAVAAATENMSHWAGKEWDHFLHGTPVGRALN QVGQAFKGVGEEGWGFLKGLYEVSPNRMLLDPVGYGKTMAGMVEGAGTLVGLGPDGVPGAFDAWKALGKDVTHWDEWGSN PAEALGKSTFDVATLALPGGPLSKLGKFGHTAADALKGLKKPPGVPKPPEVKPPAAPKAPDSGQPAPSGKPGPVAPSGKP APGPADGPLPHSPTESKPPAGGTPPAAEPPKPTAAPHSGEPKPIATPPESVGKPVTPAPAEGAPAQPHEPVPAHAPASPG EPLATPAPAAAVPAAAAAPASAPAPAAAAAAPVPSASSVPMGGGAPAETPSGLGDVPHGGEPGAHPVEPPHDGAPHVPGG GDGPYHPGDGGPHGPGDGHPLADGSGPHQPGGHHPPGDGDRPPGSHPPHDGAPPDEPADGHPPEIPTPSDLPPWHQAQLA LAESPEKLVKDLIEHGCPRELAESAGANSPYAGMTAQEILNKWWDPATGTWDWPKVEGFADGIYKTARSIPKDAWLDRIG EVSDAKGDFMGAVGDSYPHRGLAPGSSGDYNRFHGTGKELPEGWEVRYGEVGDAFGQPGGGTQWVVIDKNKKTVLIKWLI ENGYLDWG
Sequences:
>Translated_888_residues MAPLACDPTALDHAGATVVAAGESLGSVISTLTAALAGTSGMAGDDPVGAALGRRYDGAAAKLIQAMADTRNGLCSIGDG VRMSAHNYAVAEAMSDLAGRASALPAPQVTGPLTVGAPPSAVGHGSGAPAGWGWVAPYIGMIWPTGDSAKLRAAAAAWAT AGANFMAAETAAGGGTMAAIGAQQIPEGAAINKALADASSATADVARQCQTIAAQLNSYAAKVDQVHAAILDLLSRICDP LTGIKEVWDLLTDEDEDEIKKIADDIRTVVDNFGREADTLGGQIEATVSAVAAATENMSHWAGKEWDHFLHGTPVGRALN QVGQAFKGVGEEGWGFLKGLYEVSPNRMLLDPVGYGKTMAGMVEGAGTLVGLGPDGVPGAFDAWKALGKDVTHWDEWGSN PAEALGKSTFDVATLALPGGPLSKLGKFGHTAADALKGLKKPPGVPKPPEVKPPAAPKAPDSGQPAPSGKPGPVAPSGKP APGPADGPLPHSPTESKPPAGGTPPAAEPPKPTAAPHSGEPKPIATPPESVGKPVTPAPAEGAPAQPHEPVPAHAPASPG EPLATPAPAAAVPAAAAAPASAPAPAAAAAAPVPSASSVPMGGGAPAETPSGLGDVPHGGEPGAHPVEPPHDGAPHVPGG GDGPYHPGDGGPHGPGDGHPLADGSGPHQPGGHHPPGDGDRPPGSHPPHDGAPPDEPADGHPPEIPTPSDLPPWHQAQLA LAESPEKLVKDLIEHGCPRELAESAGANSPYAGMTAQEILNKWWDPATGTWDWPKVEGFADGIYKTARSIPKDAWLDRIG EVSDAKGDFMGAVGDSYPHRGLAPGSSGDYNRFHGTGKELPEGWEVRYGEVGDAFGQPGGGTQWVVIDKNKKTVLIKWLI ENGYLDWG >Mature_887_residues APLACDPTALDHAGATVVAAGESLGSVISTLTAALAGTSGMAGDDPVGAALGRRYDGAAAKLIQAMADTRNGLCSIGDGV RMSAHNYAVAEAMSDLAGRASALPAPQVTGPLTVGAPPSAVGHGSGAPAGWGWVAPYIGMIWPTGDSAKLRAAAAAWATA GANFMAAETAAGGGTMAAIGAQQIPEGAAINKALADASSATADVARQCQTIAAQLNSYAAKVDQVHAAILDLLSRICDPL TGIKEVWDLLTDEDEDEIKKIADDIRTVVDNFGREADTLGGQIEATVSAVAAATENMSHWAGKEWDHFLHGTPVGRALNQ VGQAFKGVGEEGWGFLKGLYEVSPNRMLLDPVGYGKTMAGMVEGAGTLVGLGPDGVPGAFDAWKALGKDVTHWDEWGSNP AEALGKSTFDVATLALPGGPLSKLGKFGHTAADALKGLKKPPGVPKPPEVKPPAAPKAPDSGQPAPSGKPGPVAPSGKPA PGPADGPLPHSPTESKPPAGGTPPAAEPPKPTAAPHSGEPKPIATPPESVGKPVTPAPAEGAPAQPHEPVPAHAPASPGE PLATPAPAAAVPAAAAAPASAPAPAAAAAAPVPSASSVPMGGGAPAETPSGLGDVPHGGEPGAHPVEPPHDGAPHVPGGG DGPYHPGDGGPHGPGDGHPLADGSGPHQPGGHHPPGDGDRPPGSHPPHDGAPPDEPADGHPPEIPTPSDLPPWHQAQLAL AESPEKLVKDLIEHGCPRELAESAGANSPYAGMTAQEILNKWWDPATGTWDWPKVEGFADGIYKTARSIPKDAWLDRIGE VSDAKGDFMGAVGDSYPHRGLAPGSSGDYNRFHGTGKELPEGWEVRYGEVGDAFGQPGGGTQWVVIDKNKKTVLIKWLIE NGYLDWG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89340; Mature: 89209
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPLACDPTALDHAGATVVAAGESLGSVISTLTAALAGTSGMAGDDPVGAALGRRYDGAA CCCCCCCCCHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHH AKLIQAMADTRNGLCSIGDGVRMSAHNYAVAEAMSDLAGRASALPAPQVTGPLTVGAPPS HHHHHHHHHHCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC AVGHGSGAPAGWGWVAPYIGMIWPTGDSAKLRAAAAAWATAGANFMAAETAAGGGTMAAI CCCCCCCCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEHHCCCCCCCEEHH GAQQIPEGAAINKALADASSATADVARQCQTIAAQLNSYAAKVDQVHAAILDLLSRICDP HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTGIKEVWDLLTDEDEDEIKKIADDIRTVVDNFGREADTLGGQIEATVSAVAAATENMSH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHH WAGKEWDHFLHGTPVGRALNQVGQAFKGVGEEGWGFLKGLYEVSPNRMLLDPVGYGKTMA HCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHH GMVEGAGTLVGLGPDGVPGAFDAWKALGKDVTHWDEWGSNPAEALGKSTFDVATLALPGG HHHHCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHCCCHHCEEEEECCCC PLSKLGKFGHTAADALKGLKKPPGVPKPPEVKPPAAPKAPDSGQPAPSGKPGPVAPSGKP CHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APGPADGPLPHSPTESKPPAGGTPPAAEPPKPTAAPHSGEPKPIATPPESVGKPVTPAPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC EGAPAQPHEPVPAHAPASPGEPLATPAPAAAVPAAAAAPASAPAPAAAAAAPVPSASSVP CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHCCCCCCCCCC MGGGAPAETPSGLGDVPHGGEPGAHPVEPPHDGAPHVPGGGDGPYHPGDGGPHGPGDGHP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LADGSGPHQPGGHHPPGDGDRPPGSHPPHDGAPPDEPADGHPPEIPTPSDLPPWHQAQLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LAESPEKLVKDLIEHGCPRELAESAGANSPYAGMTAQEILNKWWDPATGTWDWPKVEGFA HHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHH DGIYKTARSIPKDAWLDRIGEVSDAKGDFMGAVGDSYPHRGLAPGSSGDYNRFHGTGKEL HHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCC PEGWEVRYGEVGDAFGQPGGGTQWVVIDKNKKTVLIKWLIENGYLDWG CCCCCEEECCCCHHCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCC >Mature Secondary Structure APLACDPTALDHAGATVVAAGESLGSVISTLTAALAGTSGMAGDDPVGAALGRRYDGAA CCCCCCCCHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHH AKLIQAMADTRNGLCSIGDGVRMSAHNYAVAEAMSDLAGRASALPAPQVTGPLTVGAPPS HHHHHHHHHHCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC AVGHGSGAPAGWGWVAPYIGMIWPTGDSAKLRAAAAAWATAGANFMAAETAAGGGTMAAI CCCCCCCCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEHHCCCCCCCEEHH GAQQIPEGAAINKALADASSATADVARQCQTIAAQLNSYAAKVDQVHAAILDLLSRICDP HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTGIKEVWDLLTDEDEDEIKKIADDIRTVVDNFGREADTLGGQIEATVSAVAAATENMSH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHH WAGKEWDHFLHGTPVGRALNQVGQAFKGVGEEGWGFLKGLYEVSPNRMLLDPVGYGKTMA HCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHH GMVEGAGTLVGLGPDGVPGAFDAWKALGKDVTHWDEWGSNPAEALGKSTFDVATLALPGG HHHHCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHCCCHHCEEEEECCCC PLSKLGKFGHTAADALKGLKKPPGVPKPPEVKPPAAPKAPDSGQPAPSGKPGPVAPSGKP CHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APGPADGPLPHSPTESKPPAGGTPPAAEPPKPTAAPHSGEPKPIATPPESVGKPVTPAPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC EGAPAQPHEPVPAHAPASPGEPLATPAPAAAVPAAAAAPASAPAPAAAAAAPVPSASSVP CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHCCCCCCCCCC MGGGAPAETPSGLGDVPHGGEPGAHPVEPPHDGAPHVPGGGDGPYHPGDGGPHGPGDGHP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LADGSGPHQPGGHHPPGDGDRPPGSHPPHDGAPPDEPADGHPPEIPTPSDLPPWHQAQLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LAESPEKLVKDLIEHGCPRELAESAGANSPYAGMTAQEILNKWWDPATGTWDWPKVEGFA HHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHH DGIYKTARSIPKDAWLDRIGEVSDAKGDFMGAVGDSYPHRGLAPGSSGDYNRFHGTGKEL HHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCC PEGWEVRYGEVGDAFGQPGGGTQWVVIDKNKKTVLIKWLIENGYLDWG CCCCCEEECCCCHHCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA