| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is serB
Identifier: 41410095
GI number: 41410095
Start: 4454110
End: 4455021
Strand: Reverse
Name: serB
Synonym: MAP3997c
Alternate gene names: 41410095
Gene position: 4455021-4454110 (Counterclockwise)
Preceding gene: 41410096
Following gene: 41410094
Centisome position: 92.24
GC content: 69.74
Gene sequence:
>912_bases ATGACTTCCTCTGACCCGGTCAACGCAGACCCCACCGGTCACGTTGACTTGGAGTCGCTGGCCGCTGACGCCAGCGCCGC CCGCGCGATCGAGGGCATGCAGGAAGCCGCTGCCACCCAGGATGACCGCCCGCAACCCCCGATCGACCTGACCGCCGCCG CCTTCTTCGACGTCGACAACACGCTGGTGCAGGGCTCCTCGGCGGTGCACTTCGGCCGCGGGCTGGCCACCCGCAACTAC TTCACCTATAGCGACGTCCTCGGATTCATCTACGCGCAAGCCAAATTCCAGGTGCTCGGCAAGGAGAACAGCAACGACGT CGCCGCCGGCCGGCGCAAGGCGCTCGCCTTCATCGAGGGCCGGTCGGTCGAGCAGCTGGTGGCCCTCGGCGAGGAGATCT ACGACGAGATCATCGCCGACAAGATCTGGCCGGGCACCCGCGAGCTCACCCAGATGCACCTCGACGCCGGACAGCAGGTG TGGCTGATCACCGCCACGCCCTACGAACTCGCGGCCACCATCGCGCGACGGCTCGGCCTGACCGGCGCGCTGGGCACGGT GGCCGAATCGGTCGACGGCGTGTTCACGGGGCGGCTGGTCGGCGACATCCTGCACGGCACCGGCAAGGCACACGCGGTGC GCTCGCTGGCGATTCGCGAGGGGCTCAACCTGAAACGCTGCACCGCCTACTCCGACAGCTACAACGATGTGCCGATGCTG TCGCTGGTGGGCACCGCGGTGGCCATCAACCCCGACGCCCGGCTGCGCGCCCTGGCCCGCGAACGCGGATGGGAGATTCG CGATTTCCGCACCGCCCGCAAGGCGGCCCGGATCGGGGTGCCGTCGGCGCTGGCGCTGGGCGCCGCCGGTGGTGCGCTGG CCGCTCTGGCCTCCAGACGGCAATCGCGCTGA
Upstream 100 bases:
>100_bases CCGCCGAACCGTCAACGCCCCCACGCCGTCTGCCCGATAGGGTTGGATATCGGGCACCCGCTGGGTCGCCAGGCAGCACA GCGATCTAGGAGGTTCGGCG
Downstream 100 bases:
>100_bases TAAGCTGCGCCGCGCAGACATTTTTGAGCGGAGAGCACAGCGGCATGACAGTCCCCAAAGAAGCCGAAGGACTTATCGGC AGCCATTACCGCGCACCCGA
Product: hypothetical protein
Products: L-serine; D-serine; phosphate
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MTSSDPVNADPTGHVDLESLAADASAARAIEGMQEAAATQDDRPQPPIDLTAAAFFDVDNTLVQGSSAVHFGRGLATRNY FTYSDVLGFIYAQAKFQVLGKENSNDVAAGRRKALAFIEGRSVEQLVALGEEIYDEIIADKIWPGTRELTQMHLDAGQQV WLITATPYELAATIARRLGLTGALGTVAESVDGVFTGRLVGDILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPML SLVGTAVAINPDARLRALARERGWEIRDFRTARKAARIGVPSALALGAAGGALAALASRRQSR
Sequences:
>Translated_303_residues MTSSDPVNADPTGHVDLESLAADASAARAIEGMQEAAATQDDRPQPPIDLTAAAFFDVDNTLVQGSSAVHFGRGLATRNY FTYSDVLGFIYAQAKFQVLGKENSNDVAAGRRKALAFIEGRSVEQLVALGEEIYDEIIADKIWPGTRELTQMHLDAGQQV WLITATPYELAATIARRLGLTGALGTVAESVDGVFTGRLVGDILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPML SLVGTAVAINPDARLRALARERGWEIRDFRTARKAARIGVPSALALGAAGGALAALASRRQSR >Mature_302_residues TSSDPVNADPTGHVDLESLAADASAARAIEGMQEAAATQDDRPQPPIDLTAAAFFDVDNTLVQGSSAVHFGRGLATRNYF TYSDVLGFIYAQAKFQVLGKENSNDVAAGRRKALAFIEGRSVEQLVALGEEIYDEIIADKIWPGTRELTQMHLDAGQQVW LITATPYELAATIARRLGLTGALGTVAESVDGVFTGRLVGDILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPMLS LVGTAVAINPDARLRALARERGWEIRDFRTARKAARIGVPSALALGAAGGALAALASRRQSR
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: 3.1.3.3
Molecular weight: Translated: 32262; Mature: 32131
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSDPVNADPTGHVDLESLAADASAARAIEGMQEAAATQDDRPQPPIDLTAAAFFDVDN CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCH TLVQGSSAVHFGRGLATRNYFTYSDVLGFIYAQAKFQVLGKENSNDVAAGRRKALAFIEG HHHCCCCCEECCCCCHHCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHEECC RSVEQLVALGEEIYDEIIADKIWPGTRELTQMHLDAGQQVWLITATPYELAATIARRLGL CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCC TGALGTVAESVDGVFTGRLVGDILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPML CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEEECCCCCCCCCHHH SLVGTAVAINPDARLRALARERGWEIRDFRTARKAARIGVPSALALGAAGGALAALASRR HHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHH QSR CCC >Mature Secondary Structure TSSDPVNADPTGHVDLESLAADASAARAIEGMQEAAATQDDRPQPPIDLTAAAFFDVDN CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCH TLVQGSSAVHFGRGLATRNYFTYSDVLGFIYAQAKFQVLGKENSNDVAAGRRKALAFIEG HHHCCCCCEECCCCCHHCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHEECC RSVEQLVALGEEIYDEIIADKIWPGTRELTQMHLDAGQQVWLITATPYELAATIARRLGL CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCC TGALGTVAESVDGVFTGRLVGDILHGTGKAHAVRSLAIREGLNLKRCTAYSDSYNDVPML CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEEECCCCCCCCCHHH SLVGTAVAINPDARLRALARERGWEIRDFRTARKAARIGVPSALALGAAGGALAALASRR HHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHH QSR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-O-phosphoserine; D-O-phosphoserine; H2O
Specific reaction: L(or D)-O-phosphoserine + H2O = L(or D)-serine + phosphate
General reaction: phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]