| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41407477
Identifier: 41407477
GI number: 41407477
Start: 1491136
End: 1492200
Strand: Direct
Name: 41407477
Synonym: MAP1379
Alternate gene names: NA
Gene position: 1491136-1492200 (Clockwise)
Preceding gene: 41407476
Following gene: 41407478
Centisome position: 30.87
GC content: 65.54
Gene sequence:
>1065_bases ATGGCTATTGACCTCACTGGTGGCATCGACCCATCGCGCGAACTCGTGTTCGCTGAGCGTCCAGAGAACCCGGAGATGCG AGACTCGGTGAGCTTCTGGGTCGTCGACGATCGCGGCGAGATCGGCCTGCCGAGGATCGGAATCGAAGCCGTCGCAGCCA ATTGGGATGCCCACGACATCCAAGTCAACGTCGCTTACCCCGACGGTCGGGTGTACCGCCTGAGAGCCAACGGTCCGTCC CTGCCCGCGGCGGGACCGGACGGCCGGCCGACGGTGTTGGGGGCAGGGGGATTGGCGTTCCGCTGCGTCGAACCATTTCA CACATGGACGATGACCTACGAGGGCAAGGCCGTGCAGACGTCGTCGGCCGATCTGGTCAGCGGGCGCAAGGACGGCCCGT TGGTCGACGTCGCTTTTGAGGTTGAGGCCGCGATGGCGGTGCCGCCCTGGGTTCAGGGCGCCTTACGCAACGATGCAGGC CAACAACTGAAGTCATCCATCGAGGGCAACCTGATGGGCGGCCCCCGCTATGAACAACTCTTTCGGGCGGCCGGGTCGGT GACGGTCGACGGCAGCGAGCGGCGGTTCAGCGGCAGTGGTCTGCGGATCCGCCGCCAAGGGGTGCGCAAGCTGGCCGGCT TTTGGGGCCACGCCTGGCAGTCGGCGGTGTTCCCGAGCGGAAAAGCGTTCGGCTACATCGCCTATCCACCGCGACTCGAC GGCCAGCCCACGTTCAACGAGGGCTACGTCTTTACCGGCGACGGGCCGCTGATCCCGGCGCGCGTGGTGCAGGCGCCGTG GCTGACGCGGTTGCAGGCCCTGGGCGAAGACGTGTCACTGGTATTGGAAACCGGCCACGGCGTCGTCGCCGTCGAGGGAG AGACGGTGTTCTCCACCCACGACATCCATCACGACGACGACTCCTACTCCGTACATGCCATGAAGAAGGAGATGCCCAGT TTCCCCGCACTGCAGCAAGCCGGTGTGCGCTACCGCTGGGACGGCGAGGAGACCTACGGCATGCTCGAACGCTCCAACCC GCTCGACAAGATTCATCGGGACTGA
Upstream 100 bases:
>100_bases GTTCAGTTCGGGATCGACCTGGATTCGATACGGCCGCTGTTCGCCGACTACATCACGGCCGCCGCCGACTGGACCGCACA CGCCGACATCTAGGAGAGCC
Downstream 100 bases:
>100_bases ACTGCCTTGGCGGACAACAAAGTAGCTCTCATCACCGGAGCCGCGCGCGGGCAGGGACGTGCCCACGCGGTGCGGCTGAG CGCCGGCGGCGCCGACATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MAIDLTGGIDPSRELVFAERPENPEMRDSVSFWVVDDRGEIGLPRIGIEAVAANWDAHDIQVNVAYPDGRVYRLRANGPS LPAAGPDGRPTVLGAGGLAFRCVEPFHTWTMTYEGKAVQTSSADLVSGRKDGPLVDVAFEVEAAMAVPPWVQGALRNDAG QQLKSSIEGNLMGGPRYEQLFRAAGSVTVDGSERRFSGSGLRIRRQGVRKLAGFWGHAWQSAVFPSGKAFGYIAYPPRLD GQPTFNEGYVFTGDGPLIPARVVQAPWLTRLQALGEDVSLVLETGHGVVAVEGETVFSTHDIHHDDDSYSVHAMKKEMPS FPALQQAGVRYRWDGEETYGMLERSNPLDKIHRD
Sequences:
>Translated_354_residues MAIDLTGGIDPSRELVFAERPENPEMRDSVSFWVVDDRGEIGLPRIGIEAVAANWDAHDIQVNVAYPDGRVYRLRANGPS LPAAGPDGRPTVLGAGGLAFRCVEPFHTWTMTYEGKAVQTSSADLVSGRKDGPLVDVAFEVEAAMAVPPWVQGALRNDAG QQLKSSIEGNLMGGPRYEQLFRAAGSVTVDGSERRFSGSGLRIRRQGVRKLAGFWGHAWQSAVFPSGKAFGYIAYPPRLD GQPTFNEGYVFTGDGPLIPARVVQAPWLTRLQALGEDVSLVLETGHGVVAVEGETVFSTHDIHHDDDSYSVHAMKKEMPS FPALQQAGVRYRWDGEETYGMLERSNPLDKIHRD >Mature_353_residues AIDLTGGIDPSRELVFAERPENPEMRDSVSFWVVDDRGEIGLPRIGIEAVAANWDAHDIQVNVAYPDGRVYRLRANGPSL PAAGPDGRPTVLGAGGLAFRCVEPFHTWTMTYEGKAVQTSSADLVSGRKDGPLVDVAFEVEAAMAVPPWVQGALRNDAGQ QLKSSIEGNLMGGPRYEQLFRAAGSVTVDGSERRFSGSGLRIRRQGVRKLAGFWGHAWQSAVFPSGKAFGYIAYPPRLDG QPTFNEGYVFTGDGPLIPARVVQAPWLTRLQALGEDVSLVLETGHGVVAVEGETVFSTHDIHHDDDSYSVHAMKKEMPSF PALQQAGVRYRWDGEETYGMLERSNPLDKIHRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38644; Mature: 38513
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00196 COPPER_BLUE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDLTGGIDPSRELVFAERPENPEMRDSVSFWVVDDRGEIGLPRIGIEAVAANWDAHDI CEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCEEE QVNVAYPDGRVYRLRANGPSLPAAGPDGRPTVLGAGGLAFRCVEPFHTWTMTYEGKAVQT EEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEEECCCEEEEEEECCCEEEC SSADLVSGRKDGPLVDVAFEVEAAMAVPPWVQGALRNDAGQQLKSSIEGNLMGGPRYEQL CCCHHHCCCCCCCEEEEEEEEEEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHH FRAAGSVTVDGSERRFSGSGLRIRRQGVRKLAGFWGHAWQSAVFPSGKAFGYIAYPPRLD HHHCCCEEECCCCCEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC GQPTFNEGYVFTGDGPLIPARVVQAPWLTRLQALGEDVSLVLETGHGVVAVEGETVFSTH CCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHCCCCEEEEEECCCCEEEEECCEEEEEC DIHHDDDSYSVHAMKKEMPSFPALQQAGVRYRWDGEETYGMLERSNPLDKIHRD CCCCCCCCEEEEEHHHHCCCCCCHHHCCCEEEECCCHHHHHHCCCCCHHHHCCC >Mature Secondary Structure AIDLTGGIDPSRELVFAERPENPEMRDSVSFWVVDDRGEIGLPRIGIEAVAANWDAHDI EEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCEEE QVNVAYPDGRVYRLRANGPSLPAAGPDGRPTVLGAGGLAFRCVEPFHTWTMTYEGKAVQT EEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEEECCCEEEEEEECCCEEEC SSADLVSGRKDGPLVDVAFEVEAAMAVPPWVQGALRNDAGQQLKSSIEGNLMGGPRYEQL CCCHHHCCCCCCCEEEEEEEEEEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHH FRAAGSVTVDGSERRFSGSGLRIRRQGVRKLAGFWGHAWQSAVFPSGKAFGYIAYPPRLD HHHCCCEEECCCCCEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC GQPTFNEGYVFTGDGPLIPARVVQAPWLTRLQALGEDVSLVLETGHGVVAVEGETVFSTH CCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHCCCCEEEEEECCCCEEEEECCEEEEEC DIHHDDDSYSVHAMKKEMPSFPALQQAGVRYRWDGEETYGMLERSNPLDKIHRD CCCCCCCCEEEEEHHHHCCCCCCHHHCCCEEEECCCHHHHHHCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA