| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41407072
Identifier: 41407072
GI number: 41407072
Start: 1011946
End: 1013064
Strand: Direct
Name: 41407072
Synonym: MAP0974
Alternate gene names: NA
Gene position: 1011946-1013064 (Clockwise)
Preceding gene: 41407071
Following gene: 41407073
Centisome position: 20.95
GC content: 69.71
Gene sequence:
>1119_bases TTGACAAAACTTCATCAGAACCCTTCGCCGATGTTGCGGCTCGTGGTCGGGGGGCTGCTGGTAGTCCTGGCATTCGCGGG CGGATACGCGGTTTCGGTGTGCAAGACGGTGACGTTGACCGTCGACGGTGTCGCCATGCGGGTGACCACGATGAAGTCCA AGGTGATCGACGTCGTCGAGGAGAACGGCTTCGTCGTCGACGACCGTGACGACCTGTACCCCGCCGCCGATGTCGCGGTG CACGACGCCGGCAAGATCGTGCTGCGGCGCAGCCGCCCGCTGCAGATCTCCCTGGACGGCCACGACAGCAAGCAGGTGTG GACCACGGCCTCCACGGTCGACGAGGCGCTGGCCCAGCTGGCCATGACAGATACCGCCCCGGCCGCGGCCAACCGCGGCA GCCGGGTGCCGCTGGCCGGCATGGCCCTGCCCGTCGTCAGCGCCAAGACGGTGCGCATCAACGACGGCGGCGCCGTGCGC ACCGTGCATCTGGCGGCATCCAACGTCGCGGGCCTGCTCAGCGCCGCCGGCGCGCCGCTGGCCGAAAGCGACCAGGTGGC GCCCCCGGCGTCGGCGCCGATCGTCGACGGCATGGAGATCCAGGTGACCCGCAACCGGATTCAGCAGGTCACCGAGCGGA TGCCGTTGCCGCCCAACGCCCGCCGGATCGAAGACCCGGACATGAACATGAGCCGCCAGGTGGTCGAGGATCCCGGCAGC CCGGGCACGCAGGACGTCACCTTCTCGGTGGCCACCGTCAACGGCGTGGAGACCGGCCGGCTGCCGATCGCCAACACGGT GATCACCCCGGCCCGCGAATCGGTGGTGAGGGTCGGCACCAAGCCCGGCACCGAGGTCCCGCCGATCAGCGACGGCTCCA TCTGGGACGCCATCGCGGGCTGCGAAGCCGGCGGAAACTGGGCGATCAACACCGGTAACGGGTATTACGGCGGTGTGCAG TTCGACCAGGGCACGTGGGAGCGCAACGGCGGGTTGCGGTTCGCCCCGCGCGCCGACCTGGCCACCCGCGAAGAGCAGAT CACCGTCGCCGAGGTGACCCGAGAGCGCCAGGGTTGGGGTGCGTGGCCAGTGTGCAGCGGAAGAGCTGGTGCGCGCTGA
Upstream 100 bases:
>100_bases TTACCGTCTTGTGATCGAACGGGTGGGCCTGCGGGCCCTTCATTTGTGAATTGCCGCTGAGTGAGTGGTTGCTGAGGTTG GGTAGCGCGCGTTGAGTGTA
Downstream 100 bases:
>100_bases CCATCCGGCTCCTCGGGCGCACCGAGATCAGGCGGCTGGCCAAAGAACTTGAATTTCGGCCACGGAAATCCCTCGGCCAG AACTTCGTGCACGACGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Protein; Transglycosylase Domain Protein; Resuscitation-Promoting Factor RpfA; Resuscitation-Promoting Factor; Resuscitation-Promoting Factor RpfB; Transglycosylase-Like Protein; Peptidase; G5 Domain-Containing Protein; Transglycosylase Family Protein; M23 Family Secreted Peptidase; M23 Peptidase Domain-Containing Protein; Resuscitation-Promoting Factor RpfC; Resuscitation-Promoting Factor RpfE; Transglycosylase-Like Domain Protein; Resuscitation-Promoting Factor-Like Protein; Transglycosylase; Resuscitation-Promoting Factor Rpfe; Resuscitation-Promoting Factor RpfD; N-Acetylmuramoyl-L-Alanine Amidase; Secreted Esterase; Resuscitation-Promoting Factor Rpfd; LOW QUALITY PROTEIN Lipoprotein; G5 Domain Protein; Secreted Transglycosydase; Resuscitation-Promoting Factor Rpfb; G5 Domain Transglycosylase; 3D Domain Protein; Resuscitation-Promoting Factor Rpfa; Transglycosylase Domain Containing Protein; Vegetative Cell Wall; Cell Wall Catabolism Protein; FHA Domain-Containing Protein; Cell Wall Function Protein; Transglycosylase-Like Domain-Containing Protein; Resuscitation-Promoting Factor Rpfc; Lipoprotein; M24/M37 Family Peptidase
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MTKLHQNPSPMLRLVVGGLLVVLAFAGGYAVSVCKTVTLTVDGVAMRVTTMKSKVIDVVEENGFVVDDRDDLYPAADVAV HDAGKIVLRRSRPLQISLDGHDSKQVWTTASTVDEALAQLAMTDTAPAAANRGSRVPLAGMALPVVSAKTVRINDGGAVR TVHLAASNVAGLLSAAGAPLAESDQVAPPASAPIVDGMEIQVTRNRIQQVTERMPLPPNARRIEDPDMNMSRQVVEDPGS PGTQDVTFSVATVNGVETGRLPIANTVITPARESVVRVGTKPGTEVPPISDGSIWDAIAGCEAGGNWAINTGNGYYGGVQ FDQGTWERNGGLRFAPRADLATREEQITVAEVTRERQGWGAWPVCSGRAGAR
Sequences:
>Translated_372_residues MTKLHQNPSPMLRLVVGGLLVVLAFAGGYAVSVCKTVTLTVDGVAMRVTTMKSKVIDVVEENGFVVDDRDDLYPAADVAV HDAGKIVLRRSRPLQISLDGHDSKQVWTTASTVDEALAQLAMTDTAPAAANRGSRVPLAGMALPVVSAKTVRINDGGAVR TVHLAASNVAGLLSAAGAPLAESDQVAPPASAPIVDGMEIQVTRNRIQQVTERMPLPPNARRIEDPDMNMSRQVVEDPGS PGTQDVTFSVATVNGVETGRLPIANTVITPARESVVRVGTKPGTEVPPISDGSIWDAIAGCEAGGNWAINTGNGYYGGVQ FDQGTWERNGGLRFAPRADLATREEQITVAEVTRERQGWGAWPVCSGRAGAR >Mature_371_residues TKLHQNPSPMLRLVVGGLLVVLAFAGGYAVSVCKTVTLTVDGVAMRVTTMKSKVIDVVEENGFVVDDRDDLYPAADVAVH DAGKIVLRRSRPLQISLDGHDSKQVWTTASTVDEALAQLAMTDTAPAAANRGSRVPLAGMALPVVSAKTVRINDGGAVRT VHLAASNVAGLLSAAGAPLAESDQVAPPASAPIVDGMEIQVTRNRIQQVTERMPLPPNARRIEDPDMNMSRQVVEDPGSP GTQDVTFSVATVNGVETGRLPIANTVITPARESVVRVGTKPGTEVPPISDGSIWDAIAGCEAGGNWAINTGNGYYGGVQF DQGTWERNGGLRFAPRADLATREEQITVAEVTRERQGWGAWPVCSGRAGAR
Specific function: Unknown
COG id: COG3583
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39186; Mature: 39055
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS51109 G5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLHQNPSPMLRLVVGGLLVVLAFAGGYAVSVCKTVTLTVDGVAMRVTTMKSKVIDVVE CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEHHHHHHHHHHH ENGFVVDDRDDLYPAADVAVHDAGKIVLRRSRPLQISLDGHDSKQVWTTASTVDEALAQL CCCEEEECCCCCCCCHHEEEECCCEEEEECCCCEEEEECCCCCCEEEEEHHHHHHHHHHH AMTDTAPAAANRGSRVPLAGMALPVVSAKTVRINDGGAVRTVHLAASNVAGLLSAAGAPL HHCCCCCHHCCCCCCCCCCCEEEEEECEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCC AESDQVAPPASAPIVDGMEIQVTRNRIQQVTERMPLPPNARRIEDPDMNMSRQVVEDPGS CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC PGTQDVTFSVATVNGVETGRLPIANTVITPARESVVRVGTKPGTEVPPISDGSIWDAIAG CCCCEEEEEEEEECCCCCCCCCCCCEEECCCHHHHEEECCCCCCCCCCCCCCCHHHHHHC CEAGGNWAINTGNGYYGGVQFDQGTWERNGGLRFAPRADLATREEQITVAEVTRERQGWG CCCCCCEEEECCCCEECCEEECCCCEECCCCEEECCCCCCCCCCCCEEHHHHHHHHCCCC AWPVCSGRAGAR CCCCCCCCCCCC >Mature Secondary Structure TKLHQNPSPMLRLVVGGLLVVLAFAGGYAVSVCKTVTLTVDGVAMRVTTMKSKVIDVVE CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEHHHHHHHHHHH ENGFVVDDRDDLYPAADVAVHDAGKIVLRRSRPLQISLDGHDSKQVWTTASTVDEALAQL CCCEEEECCCCCCCCHHEEEECCCEEEEECCCCEEEEECCCCCCEEEEEHHHHHHHHHHH AMTDTAPAAANRGSRVPLAGMALPVVSAKTVRINDGGAVRTVHLAASNVAGLLSAAGAPL HHCCCCCHHCCCCCCCCCCCEEEEEECEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCC AESDQVAPPASAPIVDGMEIQVTRNRIQQVTERMPLPPNARRIEDPDMNMSRQVVEDPGS CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC PGTQDVTFSVATVNGVETGRLPIANTVITPARESVVRVGTKPGTEVPPISDGSIWDAIAG CCCCEEEEEEEEECCCCCCCCCCCCEEECCCHHHHEEECCCCCCCCCCCCCCCHHHHHHC CEAGGNWAINTGNGYYGGVQFDQGTWERNGGLRFAPRADLATREEQITVAEVTRERQGWG CCCCCCEEEECCCCEECCEEECCCCEECCCCEEECCCCCCCCCCCCEEHHHHHHHHCCCC AWPVCSGRAGAR CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA