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The map label for this gene is yabD [H]

Identifier: 41407071

GI number: 41407071

Start: 1010920

End: 1011774

Strand: Direct

Name: yabD [H]

Synonym: MAP0973

Alternate gene names: 41407071

Gene position: 1010920-1011774 (Clockwise)

Preceding gene: 41407069

Following gene: 41407072

Centisome position: 20.93

GC content: 72.75

Gene sequence:

>855_bases
GTGCGCGTGAGCTCCAACCGACGAGAACGACAAGCCCCGCCCGCCCCGGAGCCGCTGGCGCCCCTGATCGACGCCCACAC
CCACCTCGACGCCTGCGCCGCCGGACCGGAGACGGGAGCCGCCGGCGTGCGGGCCATCGTGGACCGCGCGGCGGCGGTGG
GGGTGCAGGCGGTGGTCACCGTCGCCGACGATCTGGACTCGGCGCGCTGGGTCACCCGCGCGGCGGAGTGGGATCCGCGG
GTGTACGCGGCCACGGCGCTGCATCCCACCCGCGCCGACGCGCTGGACGACGCGGCGCGCGCCGAGATCGAGCGGCTGGT
GGCCCACCCCGGGGTGGTGGCCGTCGGGGAGACCGGCATGGACCTGTACTGGCCGGGGCGGCTGGACGGCTGCGCCGAGC
CGGCCGTGCAGCGGGAGGCCTTCGCCTGGCATATCGATCTGGCCAAACGGTGCGGGAAACCGCTGATGATCCACAACCGG
GAGGCCGACGCCGAGGTGCTCGACGTGCTGGCCGCCGAGGGTGCCCCGGACCTGGTGATCTTCCACTGCTTCTCGTCGGA
TGCGGCCATGGCCCGCCGTTGCGTGGACGCCGGCTGGCTGCTGAGCCTGTCCGGCACCGTGAGCTTCCGCAACGCCCGCG
CCCTGCGCGAAGCCGTGCCGTTGATACCGCCCGGGCAGCTGCTGGTGGAAACGGATGCGCCGTTTTTGACCCCGCACCCG
CACCGGGGGACGGCCAATGAGCCCTACTGCCTTCCTTATACTGTTCGGGCGATCGCCGAACTGGTGGATCGCCGCCCCGA
AGAGCTGGCCGCGGTGACGACGGACAATGCTCGACGGGTGTACGGACTGGCCTGA

Upstream 100 bases:

>100_bases
GGCGATGTACTCGTAGGCATGCCCGACGTGCGGGTCGCCGTTGGGGTACGTGATCGCGGTGGTGACGTAGAAGGGCCTCA
TCGAGAGTCCACCTTATTGT

Downstream 100 bases:

>100_bases
CGATCAGGGCCGGCGAACGGGTGATTCTTTTAACATCGCCGCGTCGGAGTTGCCCAATATTGGCCGGTTCGTTACCGTCT
TGTGATCGAACGGGTGGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MRVSSNRRERQAPPAPEPLAPLIDAHTHLDACAAGPETGAAGVRAIVDRAAAVGVQAVVTVADDLDSARWVTRAAEWDPR
VYAATALHPTRADALDDAARAEIERLVAHPGVVAVGETGMDLYWPGRLDGCAEPAVQREAFAWHIDLAKRCGKPLMIHNR
EADAEVLDVLAAEGAPDLVIFHCFSSDAAMARRCVDAGWLLSLSGTVSFRNARALREAVPLIPPGQLLVETDAPFLTPHP
HRGTANEPYCLPYTVRAIAELVDRRPEELAAVTTDNARRVYGLA

Sequences:

>Translated_284_residues
MRVSSNRRERQAPPAPEPLAPLIDAHTHLDACAAGPETGAAGVRAIVDRAAAVGVQAVVTVADDLDSARWVTRAAEWDPR
VYAATALHPTRADALDDAARAEIERLVAHPGVVAVGETGMDLYWPGRLDGCAEPAVQREAFAWHIDLAKRCGKPLMIHNR
EADAEVLDVLAAEGAPDLVIFHCFSSDAAMARRCVDAGWLLSLSGTVSFRNARALREAVPLIPPGQLLVETDAPFLTPHP
HRGTANEPYCLPYTVRAIAELVDRRPEELAAVTTDNARRVYGLA
>Mature_284_residues
MRVSSNRRERQAPPAPEPLAPLIDAHTHLDACAAGPETGAAGVRAIVDRAAAVGVQAVVTVADDLDSARWVTRAAEWDPR
VYAATALHPTRADALDDAARAEIERLVAHPGVVAVGETGMDLYWPGRLDGCAEPAVQREAFAWHIDLAKRCGKPLMIHNR
EADAEVLDVLAAEGAPDLVIFHCFSSDAAMARRCVDAGWLLSLSGTVSFRNARALREAVPLIPPGQLLVETDAPFLTPHP
HRGTANEPYCLPYTVRAIAELVDRRPEELAAVTTDNARRVYGLA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=275, Percent_Identity=27.6363636363636, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110349734, Length=171, Percent_Identity=29.8245614035088, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI110349730, Length=171, Percent_Identity=29.8245614035088, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI226061853, Length=177, Percent_Identity=29.3785310734463, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI226061614, Length=166, Percent_Identity=28.9156626506024, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=35.9848484848485, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI48994985, Length=247, Percent_Identity=29.5546558704453, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082439, Length=269, Percent_Identity=28.2527881040892, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=267, Percent_Identity=28.0898876404494, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=269, Percent_Identity=25.6505576208178, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=311, Percent_Identity=25.7234726688103, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17543026, Length=189, Percent_Identity=31.2169312169312, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24648690, Length=312, Percent_Identity=28.2051282051282, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30530; Mature: 30530

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVSSNRRERQAPPAPEPLAPLIDAHTHLDACAAGPETGAAGVRAIVDRAAAVGVQAVVT
CCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEE
VADDLDSARWVTRAAEWDPRVYAATALHPTRADALDDAARAEIERLVAHPGVVAVGETGM
EHHCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
DLYWPGRLDGCAEPAVQREAFAWHIDLAKRCGKPLMIHNREADAEVLDVLAAEGAPDLVI
EEEECCCCCCCCCHHHHHHHHEEEEEHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEE
FHCFSSDAAMARRCVDAGWLLSLSGTVSFRNARALREAVPLIPPGQLLVETDAPFLTPHP
EEEECCCHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
HRGTANEPYCLPYTVRAIAELVDRRPEELAAVTTDNARRVYGLA
CCCCCCCCEECHHHHHHHHHHHHCCHHHHEEEECCCCCEEECCC
>Mature Secondary Structure
MRVSSNRRERQAPPAPEPLAPLIDAHTHLDACAAGPETGAAGVRAIVDRAAAVGVQAVVT
CCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEE
VADDLDSARWVTRAAEWDPRVYAATALHPTRADALDDAARAEIERLVAHPGVVAVGETGM
EHHCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
DLYWPGRLDGCAEPAVQREAFAWHIDLAKRCGKPLMIHNREADAEVLDVLAAEGAPDLVI
EEEECCCCCCCCCHHHHHHHHEEEEEHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEE
FHCFSSDAAMARRCVDAGWLLSLSGTVSFRNARALREAVPLIPPGQLLVETDAPFLTPHP
EEEECCCHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
HRGTANEPYCLPYTVRAIAELVDRRPEELAAVTTDNARRVYGLA
CCCCCCCCEECHHHHHHHHHHHHCCHHHHEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]