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The map label for this gene is bphB [H]

Identifier: 39997908

GI number: 39997908

Start: 3093614

End: 3095863

Strand: Direct

Name: bphB [H]

Synonym: GSU2815

Alternate gene names: 39997908

Gene position: 3093614-3095863 (Clockwise)

Preceding gene: 39997907

Following gene: 39997911

Centisome position: 81.11

GC content: 60.93

Gene sequence:

>2250_bases
ATGAGCACAGAAGCCCCGTCACGTGATATAGCCGATCTGAGCACCCTCACAGCAGTTGTGGACTGCATGCCGGCGCCGGC
CCTTTTGATCGAGGACGAGCGGGTGTTCTGTAACCGTGCGACTGAAGCCCTCACCGGGTACCGGCGAGATGAACTCTCAT
CCCTTGACGCGTGGTTCCGCTCCCTGTTCGGCTCCGAGCACGAAAGGGCCAGGAGTCGGTTCGACGCCGACCGGGCAACC
GGGTTTCCCGTTGTGCGGCGGGAAATCATAACCAGGAAGGACGGGAGCCGGCGCCTGGTAGAGGTCGCGGGGTCGATCTG
CGGCAAGTTGATGTGCATCCTGCATGACATCACCGACCTCATGGACGTCCGGCTGCAGCTGCAGGAGCACGCGGAGCGCT
ACCGGATCATCAAGAGCACATCCATGGACGGCTTCTGGGTGGTAGACCTCCACGGCAACGTCGTGGAAGTCAACGACGCA
TGCTGCCACATTCTGGGATACAGCCGGGAAGAACTGCTGACCATGTCCCTTCACGACATCGACGCGACCGAAAGCGTGGA
GGAGACGCAGAAACACATCCGGGACATCGTCGAACAAGGTTCCGAGCGCTTCGAAGTCCGCCACCGCCGCAAAGACGGCA
CCGTCATCGACGTTGAGGTCAGCACGACGTTTCAGCCCGCTTCGCGCTGCTTCCACACCTTTATCCGGGACATCAGCGAA
CGCAAGCAGACCGAAGAGGCCCTCCGGAAAAGCGAGGAACGCTTCCGCCTTGCCATGGAGGCAACCACCGACGGCATCTG
GGACTGGAATATCGCGGCTGATAGTGGTTACTTCAGCCCGGCCTACTACCGGATCCTGGGGTACGAGCCGGAGGACTTCT
CCCCCTCTTTCCAGGTGTGGATGGAGCTCCTGCACCCGGAAGATCGGGAACGGGCCATCAGCACCAACATAGACTGTGTC
GAGGGGAGAACACAGGGCTTCCAGGCAGAGTTCCGCATGAAGGCCAAGGACGGCAGTTGGCGCTGGATTCTCGGCCGGGG
GTCGGCCGTGAACAGGGATCGCCGGGGAAAAGCCCTGCGCCTCATCGGCACCCATCAGGACATCACCGAACGCAAAACAG
CGGAAGAGGCGCTGCGCAACCGCGAGTGGCTGCTGCGGGAGGCCCAGCGGATCGGCTGTCTCGGCACCTACGATTACGAT
ATCGTGCACGACAATTGGGAATGCTCCGCCGAGTTGGACCGGATCTTCGGCATACACACGGCTACCCCCAAAAACCTTGA
ATTCTGGCTCGATCTGATTCACCCGGAGTTCAGGGAGAAGATGAAGGACTACTTCGCGTCGCTTCTCACCGAGCGGACAT
GGTTCAACATGGAGTACAAGATCATCCGCCCGTCTGACGGCCAGGAACGCTGGGTTTACGGCACGGGAGAGTTCACCCGC
GACAACGAGGGCAGGCCGGTCCGCATGATCGGGACGATCCAGGACATCACCGAACGCAAGCAGACAGAGGAAACCATCGG
CAAGCTCAACCGGGAACTCGACAGGCGCGTCATGGAACGAACCGGCCAATTGGAAGAAGCCATCCGGGAGCAGGAATCCT
TCAGCTATTCGGTTTCCCATGATCTGCGGGCGCCGCTGCGGCACATCAACAGCTACAGCAATCTGGTTATCGAGGACTAC
AGCGATCAGATCCCCGTGGAGGCCCGCTACTACCTCGAACGCATCTGTACGGCAAGCGGCAAGATGGGGCAACTGATCGA
CGATCTGCTGGAGCTTTCGCGGGTGGGCCGGGTCGAGTTGCGTAAAGGCACCGTTAACCTGAGCAAAAATGCGGCATCGG
TCGCATCGATGCTTCAGGAAACCGAGCCCTACCGCGCCGTTGATTGGGTCATTGCCGGCGATCTTACGGCGCAGGCCGAC
CGGACCCTGATCCGGCAGGTGTTGCTCAACCTGATGGGCAACGCCCTGAAGTACACCGCCAAGACGTCCCGGGCGCGAAT
CGAGATCGGCAGCGCCGTGATCGATGGCGAGACGGTCTTCTTCGTCAGGGACAACGGCGCCGGTTTCGACATGGCTTACG
TGAACAAACTGTTCCGCCCCTTCCAGCGGCTGCACGGCGGCGAGTTCCCCGGCACCGGCATCGGTCTGGCAACAGTCCAG
CGGATCATCCAACGGCACGGCGGCCGGGTCTGGGCAGAGGGCAAAGTCAACGGCGGAGCAACGTTCTATTTCTCCCTGCC
TGAAATCTGA

Upstream 100 bases:

>100_bases
ATTATGGTAACAAAAACTAATTTGCACTGCGCATACTAAACAAATAGAATAAACATTTCTCTCGACACTCCCCCCACAAA
CATTGCACTCCGGTGACTGA

Downstream 100 bases:

>100_bases
CGATCGTGCACTCCCTCCCTGCAGCGAAAAGGGCGTTCCCCGATGGAGAGCGCCCTTTTTGCTGCGGACACAGAGTTCGA
CTGGTACATCAAGCGGTTCA

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 749; Mature: 748

Protein sequence:

>749_residues
MSTEAPSRDIADLSTLTAVVDCMPAPALLIEDERVFCNRATEALTGYRRDELSSLDAWFRSLFGSEHERARSRFDADRAT
GFPVVRREIITRKDGSRRLVEVAGSICGKLMCILHDITDLMDVRLQLQEHAERYRIIKSTSMDGFWVVDLHGNVVEVNDA
CCHILGYSREELLTMSLHDIDATESVEETQKHIRDIVEQGSERFEVRHRRKDGTVIDVEVSTTFQPASRCFHTFIRDISE
RKQTEEALRKSEERFRLAMEATTDGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVWMELLHPEDRERAISTNIDCV
EGRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALRLIGTHQDITERKTAEEALRNREWLLREAQRIGCLGTYDYD
IVHDNWECSAELDRIFGIHTATPKNLEFWLDLIHPEFREKMKDYFASLLTERTWFNMEYKIIRPSDGQERWVYGTGEFTR
DNEGRPVRMIGTIQDITERKQTEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSHDLRAPLRHINSYSNLVIEDY
SDQIPVEARYYLERICTASGKMGQLIDDLLELSRVGRVELRKGTVNLSKNAASVASMLQETEPYRAVDWVIAGDLTAQAD
RTLIRQVLLNLMGNALKYTAKTSRARIEIGSAVIDGETVFFVRDNGAGFDMAYVNKLFRPFQRLHGGEFPGTGIGLATVQ
RIIQRHGGRVWAEGKVNGGATFYFSLPEI

Sequences:

>Translated_749_residues
MSTEAPSRDIADLSTLTAVVDCMPAPALLIEDERVFCNRATEALTGYRRDELSSLDAWFRSLFGSEHERARSRFDADRAT
GFPVVRREIITRKDGSRRLVEVAGSICGKLMCILHDITDLMDVRLQLQEHAERYRIIKSTSMDGFWVVDLHGNVVEVNDA
CCHILGYSREELLTMSLHDIDATESVEETQKHIRDIVEQGSERFEVRHRRKDGTVIDVEVSTTFQPASRCFHTFIRDISE
RKQTEEALRKSEERFRLAMEATTDGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVWMELLHPEDRERAISTNIDCV
EGRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALRLIGTHQDITERKTAEEALRNREWLLREAQRIGCLGTYDYD
IVHDNWECSAELDRIFGIHTATPKNLEFWLDLIHPEFREKMKDYFASLLTERTWFNMEYKIIRPSDGQERWVYGTGEFTR
DNEGRPVRMIGTIQDITERKQTEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSHDLRAPLRHINSYSNLVIEDY
SDQIPVEARYYLERICTASGKMGQLIDDLLELSRVGRVELRKGTVNLSKNAASVASMLQETEPYRAVDWVIAGDLTAQAD
RTLIRQVLLNLMGNALKYTAKTSRARIEIGSAVIDGETVFFVRDNGAGFDMAYVNKLFRPFQRLHGGEFPGTGIGLATVQ
RIIQRHGGRVWAEGKVNGGATFYFSLPEI
>Mature_748_residues
STEAPSRDIADLSTLTAVVDCMPAPALLIEDERVFCNRATEALTGYRRDELSSLDAWFRSLFGSEHERARSRFDADRATG
FPVVRREIITRKDGSRRLVEVAGSICGKLMCILHDITDLMDVRLQLQEHAERYRIIKSTSMDGFWVVDLHGNVVEVNDAC
CHILGYSREELLTMSLHDIDATESVEETQKHIRDIVEQGSERFEVRHRRKDGTVIDVEVSTTFQPASRCFHTFIRDISER
KQTEEALRKSEERFRLAMEATTDGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVWMELLHPEDRERAISTNIDCVE
GRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALRLIGTHQDITERKTAEEALRNREWLLREAQRIGCLGTYDYDI
VHDNWECSAELDRIFGIHTATPKNLEFWLDLIHPEFREKMKDYFASLLTERTWFNMEYKIIRPSDGQERWVYGTGEFTRD
NEGRPVRMIGTIQDITERKQTEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSHDLRAPLRHINSYSNLVIEDYS
DQIPVEARYYLERICTASGKMGQLIDDLLELSRVGRVELRKGTVNLSKNAASVASMLQETEPYRAVDWVIAGDLTAQADR
TLIRQVLLNLMGNALKYTAKTSRARIEIGSAVIDGETVFFVRDNGAGFDMAYVNKLFRPFQRLHGGEFPGTGIGLATVQR
IIQRHGGRVWAEGKVNGGATFYFSLPEI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=262, Percent_Identity=29.3893129770992, Blast_Score=104, Evalue=3e-23,
Organism=Escherichia coli, GI1788549, Length=266, Percent_Identity=30.0751879699248, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI48994928, Length=284, Percent_Identity=27.4647887323944, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1786912, Length=230, Percent_Identity=31.7391304347826, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1790346, Length=237, Percent_Identity=29.957805907173, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1789149, Length=269, Percent_Identity=25.2788104089219, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1790551, Length=276, Percent_Identity=25.3623188405797, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1786783, Length=285, Percent_Identity=24.5614035087719, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081816, Length=269, Percent_Identity=27.8810408921933, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI145693157, Length=272, Percent_Identity=23.8970588235294, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1788393, Length=262, Percent_Identity=25.1908396946565, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86102; Mature: 85971

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEAPSRDIADLSTLTAVVDCMPAPALLIEDERVFCNRATEALTGYRRDELSSLDAWFR
CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SLFGSEHERARSRFDADRATGFPVVRREIITRKDGSRRLVEVAGSICGKLMCILHDITDL
HHCCCHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDVRLQLQEHAERYRIIKSTSMDGFWVVDLHGNVVEVNDACCHILGYSREELLTMSLHDI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECHHHHHHHCCCHHHHEEEEHHCC
DATESVEETQKHIRDIVEQGSERFEVRHRRKDGTVIDVEVSTTFQPASRCFHTFIRDISE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
RKQTEEALRKSEERFRLAMEATTDGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVW
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHEEEECCCCCCCCCHHHHH
MELLHPEDRERAISTNIDCVEGRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALR
HHHHCCCHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEE
LIGTHQDITERKTAEEALRNREWLLREAQRIGCLGTYDYDIVHDNWECSAELDRIFGIHT
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCHHHHHHHHEEEC
ATPKNLEFWLDLIHPEFREKMKDYFASLLTERTWFNMEYKIIRPSDGQERWVYGTGEFTR
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCCEEEECCCCCC
DNEGRPVRMIGTIQDITERKQTEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSH
CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEHHH
DLRAPLRHINSYSNLVIEDYSDQIPVEARYYLERICTASGKMGQLIDDLLELSRVGRVEL
HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE
RKGTVNLSKNAASVASMLQETEPYRAVDWVIAGDLTAQADRTLIRQVLLNLMGNALKYTA
ECCCEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
KTSRARIEIGSAVIDGETVFFVRDNGAGFDMAYVNKLFRPFQRLHGGEFPGTGIGLATVQ
HCCCCEEEECCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
RIIQRHGGRVWAEGKVNGGATFYFSLPEI
HHHHHCCCEEEECCCCCCCEEEEEECCCC
>Mature Secondary Structure 
STEAPSRDIADLSTLTAVVDCMPAPALLIEDERVFCNRATEALTGYRRDELSSLDAWFR
CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SLFGSEHERARSRFDADRATGFPVVRREIITRKDGSRRLVEVAGSICGKLMCILHDITDL
HHCCCHHHHHHHHCCCHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDVRLQLQEHAERYRIIKSTSMDGFWVVDLHGNVVEVNDACCHILGYSREELLTMSLHDI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECHHHHHHHCCCHHHHEEEEHHCC
DATESVEETQKHIRDIVEQGSERFEVRHRRKDGTVIDVEVSTTFQPASRCFHTFIRDISE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
RKQTEEALRKSEERFRLAMEATTDGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVW
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHEEEECCCCCCCCCHHHHH
MELLHPEDRERAISTNIDCVEGRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALR
HHHHCCCHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEE
LIGTHQDITERKTAEEALRNREWLLREAQRIGCLGTYDYDIVHDNWECSAELDRIFGIHT
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCHHHHHHHHEEEC
ATPKNLEFWLDLIHPEFREKMKDYFASLLTERTWFNMEYKIIRPSDGQERWVYGTGEFTR
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCCEEEECCCCCC
DNEGRPVRMIGTIQDITERKQTEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSH
CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEHHH
DLRAPLRHINSYSNLVIEDYSDQIPVEARYYLERICTASGKMGQLIDDLLELSRVGRVEL
HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE
RKGTVNLSKNAASVASMLQETEPYRAVDWVIAGDLTAQADRTLIRQVLLNLMGNALKYTA
ECCCEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
KTSRARIEIGSAVIDGETVFFVRDNGAGFDMAYVNKLFRPFQRLHGGEFPGTGIGLATVQ
HCCCCEEEECCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
RIIQRHGGRVWAEGKVNGGATFYFSLPEI
HHHHHCCCEEEECCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]