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The map label for this gene is ycbK [H]

Identifier: 39997900

GI number: 39997900

Start: 3087268

End: 3087957

Strand: Reverse

Name: ycbK [H]

Synonym: GSU2807

Alternate gene names: 39997900

Gene position: 3087957-3087268 (Counterclockwise)

Preceding gene: 39997909

Following gene: 39997899

Centisome position: 80.96

GC content: 61.16

Gene sequence:

>690_bases
TTGGTGTTACTGGATAATGCGGACCGGGTGGTGCTACTCACTGAAAAAGAGCGGCCCCGGGGACGCAAGATTGACATCTC
CCTCACCTTTTTGCTACCACATGACAACTGGTTTTCGGTGGAGGATGGCGTGTCGGATCATTATTTCAGCAGGCGGGGAT
TTCTCAGGGCATCACTGCTGGGGGTGCTCTGTCTCAGGGGCATAGGGTCTGCCCTGGCCACGGAATTTCTGGAAGAGAGC
TACCCTGTCGGCAGGCTCTCCCTGCGTAACATTCACACGGGCGAGCACCTGTCGGTGACCTACCGGACTCCGGACGGCGA
GGTGGACCTGGATGCCCTCAACTCCATCAACTGGCTGCTCCGCTGCCACTTCACCAACCAGCATACCGAAATGGACCTGG
CGGTGATCGAATACCTGAACATGGTCGACAAGGTACTGGGGGGCGGCAGGGAGTTCCGCATCATCTCCGGCTACCGGTCC
CCCGAATACAACCGGATACTCAGCGAACACAACGGCGCGGTGGCAAAGCAGAGCCTCCACATGGAGGGGAAGGCCATCGA
CATCGCCGTGCCCGGGGTCAGCCTGGCGGTCCTGCGGGATCTGGCCGCGGGCTTCCGGTGCGGCGGGGTCGGCTACTATC
CGCACTCGGGCTTTGTCCACCTGGATTCGGGGCGCTTCCGCACCTGGTAG

Upstream 100 bases:

>100_bases
ATATCCTCCTGTGAAAGACTTTATTGAGATTATTTTATGTGGAGTGATTCTATAAAAATTAAAGTAGTAGGGCAATGCAA
AATTACGCATCAGTACCTAT

Downstream 100 bases:

>100_bases
TGCATAAAAAATGAGCAAATCCATCCCGCAACGCTGGTTGTCCGGCAGCAATCCTGGTTGCAATTTCCCATGAAAACAGC
ACGTTATCGATTGGCACGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MVLLDNADRVVLLTEKERPRGRKIDISLTFLLPHDNWFSVEDGVSDHYFSRRGFLRASLLGVLCLRGIGSALATEFLEES
YPVGRLSLRNIHTGEHLSVTYRTPDGEVDLDALNSINWLLRCHFTNQHTEMDLAVIEYLNMVDKVLGGGREFRIISGYRS
PEYNRILSEHNGAVAKQSLHMEGKAIDIAVPGVSLAVLRDLAAGFRCGGVGYYPHSGFVHLDSGRFRTW

Sequences:

>Translated_229_residues
MVLLDNADRVVLLTEKERPRGRKIDISLTFLLPHDNWFSVEDGVSDHYFSRRGFLRASLLGVLCLRGIGSALATEFLEES
YPVGRLSLRNIHTGEHLSVTYRTPDGEVDLDALNSINWLLRCHFTNQHTEMDLAVIEYLNMVDKVLGGGREFRIISGYRS
PEYNRILSEHNGAVAKQSLHMEGKAIDIAVPGVSLAVLRDLAAGFRCGGVGYYPHSGFVHLDSGRFRTW
>Mature_229_residues
MVLLDNADRVVLLTEKERPRGRKIDISLTFLLPHDNWFSVEDGVSDHYFSRRGFLRASLLGVLCLRGIGSALATEFLEES
YPVGRLSLRNIHTGEHLSVTYRTPDGEVDLDALNSINWLLRCHFTNQHTEMDLAVIEYLNMVDKVLGGGREFRIISGYRS
PEYNRILSEHNGAVAKQSLHMEGKAIDIAVPGVSLAVLRDLAAGFRCGGVGYYPHSGFVHLDSGRFRTW

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=173, Percent_Identity=35.2601156069364, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 25700; Mature: 25700

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLDNADRVVLLTEKERPRGRKIDISLTFLLPHDNWFSVEDGVSDHYFSRRGFLRASLL
CEEECCCCEEEEEECCCCCCCCEEEEEEEEEEECCCEEECCCCCCHHHHHHCCHHHHHHH
GVLCLRGIGSALATEFLEESYPVGRLSLRNIHTGEHLSVTYRTPDGEVDLDALNSINWLL
HHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCEEEE
RCHFTNQHTEMDLAVIEYLNMVDKVLGGGREFRIISGYRSPEYNRILSEHNGAVAKQSLH
EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHEE
MEGKAIDIAVPGVSLAVLRDLAAGFRCGGVGYYPHSGFVHLDSGRFRTW
CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MVLLDNADRVVLLTEKERPRGRKIDISLTFLLPHDNWFSVEDGVSDHYFSRRGFLRASLL
CEEECCCCEEEEEECCCCCCCCEEEEEEEEEEECCCEEECCCCCCHHHHHHCCHHHHHHH
GVLCLRGIGSALATEFLEESYPVGRLSLRNIHTGEHLSVTYRTPDGEVDLDALNSINWLL
HHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCEEEE
RCHFTNQHTEMDLAVIEYLNMVDKVLGGGREFRIISGYRSPEYNRILSEHNGAVAKQSLH
EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHEE
MEGKAIDIAVPGVSLAVLRDLAAGFRCGGVGYYPHSGFVHLDSGRFRTW
CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]