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The map label for this gene is traH [H]

Identifier: 39997223

GI number: 39997223

Start: 2344357

End: 2345841

Strand: Direct

Name: traH [H]

Synonym: GSU2125

Alternate gene names: 39997223

Gene position: 2344357-2345841 (Clockwise)

Preceding gene: 39997222

Following gene: 39997224

Centisome position: 61.46

GC content: 58.72

Gene sequence:

>1485_bases
GTGAAACGAACCGTATGTACCAGAACTACCGCCGCCTGCCTGGCGGCAGCGATAGCATTGAACCCGGTCCTGTCCTGGTC
CGGCTGGGTCGATGACTGGGTGCAGCAGAAAAGCTCCACCTCGCCCAGTTATTACGAAGGGTCAAAGCGTGGCTACTATA
CCGGGGGGAGCTTTTCGGCCAGGTGGGCGAACACCGACGACCACCTGTTCACTGCCTCGCTCCCGAAGCTGAAATCCGGC
TGCGGCGGCATTGACATGTTCCTCGGCGGTTTCTCGTTCTTGAACGTGGACTACCTGGTGCAGAAGCTCCAGAACATTCT
GTCGGCAGCACCGGCAGCGGCCTTTGACATCGCCCTTAAGACCCTGGCGCCCCAGGTGGCCGACACCATCAAAACCCTCG
AAGCCATCACCGACCGGCTTAATTCGCTGCAGCTGAACGACTGCAAGGCGGCCAAGGCGCTGGTGGCGACCTCTGCCAGT
CCGTTTTCGTCGGTCATGTCGGACAGCCTGAAGGCGGAGATGAAGACAGCCCAGACCGACTTCATGGTATCAAGCGGCGC
CAAGGATCTCTACCAGGATGTCAGCAAGCTGTTCGAGAGCGAGCAGAAGGCCAACGCCGGCAACAAACCTGGAGTTCCCG
GCACTACCCAGACCTCGGCCACCAGTGCCACCGCCGGTTGCCCGGCCGAAGTCCTGCAGATATTCGGAGACGGTTCGGTT
CTGGAAAACCTGGCCAGCAAGAAAGGGATGAATAGTGATTACGTCAAACTGGTGCGCGGCTTCATCGGCGATGTAGTGAT
CCAGAGCCCTGCGACGACCGGCACCACCTACCAGGCCCAGTACGTTCCCCCGTGCGACAAGAACAACAGCTTCGATTCCT
TCATCAGCGGCTCCGCTCAGGGGCGTGATACCGCCGGGGCCTGTGCCGACATCACCGACGCCAACAAGAACCTGATGGTC
TATGTGGCCGGCAAGATGCAGTCCATCGCCGGAAAGATCAAATCAAAGACTGCTCTCACCGCCGATGAGGAAGCGTTCCT
CAAGAGCACGCCGCTGTCGGTCGGGCTGATCCTCAAGAACGCCACGGCCACCAATACTGAAAGCGAAGTCATCGGCAAGC
TTGCTGAACTGACTGCTCGGGCCTACGGCTATTACATGCTGCTCGACCTGTTCGGGCGGGCGGTGCAGTTGCAAGAGATG
GCCCGGAACATCATGTCCACCCAGAAGGGGAACAAGTCCGGCGCCTCTCCGGAGACCTGCCAACTGGCGCTCCTTGGTGA
AGGGATGCAGCACATTCAGACTCTGGAGGAAAAGACGCTGCAACTACTCACTGTGGCCCAGCAGAGTTACGCAAATGCGG
CATCGGAAATCAATGCGGTGGAGATGATCGTCCAGAACATGAAGAAGTTCGACGATACGGTATTTTCGGAATTATCGGAT
CGCTTCGGCAAAGGGATTGCCCTGCGGGCAACCGGCAGAATCTAA

Upstream 100 bases:

>100_bases
TTCCAGAAGGGAGGCGGCTTCGATGTGAAGAAGCGCCGCCTCCAAGACAAGAATCAGCCGTGAGGTCCCGGTCCAACAGC
TACAGAGAAGAGGTGCCCGT

Downstream 100 bases:

>100_bases
CGTCAGAACACAGGGGAGGAATCATGGCAGACAACAAACAGGAATCAAGCGGCAAAAAACCATCGGGAAAGCAGTCCTGG
CAGGATCGTAAGCTGAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MKRTVCTRTTAACLAAAIALNPVLSWSGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSARWANTDDHLFTASLPKLKSG
CGGIDMFLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALKTLAPQVADTIKTLEAITDRLNSLQLNDCKAAKALVATSAS
PFSSVMSDSLKAEMKTAQTDFMVSSGAKDLYQDVSKLFESEQKANAGNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSV
LENLASKKGMNSDYVKLVRGFIGDVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSAQGRDTAGACADITDANKNLMV
YVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKNATATNTESEVIGKLAELTARAYGYYMLLDLFGRAVQLQEM
ARNIMSTQKGNKSGASPETCQLALLGEGMQHIQTLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSD
RFGKGIALRATGRI

Sequences:

>Translated_494_residues
MKRTVCTRTTAACLAAAIALNPVLSWSGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSARWANTDDHLFTASLPKLKSG
CGGIDMFLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALKTLAPQVADTIKTLEAITDRLNSLQLNDCKAAKALVATSAS
PFSSVMSDSLKAEMKTAQTDFMVSSGAKDLYQDVSKLFESEQKANAGNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSV
LENLASKKGMNSDYVKLVRGFIGDVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSAQGRDTAGACADITDANKNLMV
YVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKNATATNTESEVIGKLAELTARAYGYYMLLDLFGRAVQLQEM
ARNIMSTQKGNKSGASPETCQLALLGEGMQHIQTLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSD
RFGKGIALRATGRI
>Mature_494_residues
MKRTVCTRTTAACLAAAIALNPVLSWSGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSARWANTDDHLFTASLPKLKSG
CGGIDMFLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALKTLAPQVADTIKTLEAITDRLNSLQLNDCKAAKALVATSAS
PFSSVMSDSLKAEMKTAQTDFMVSSGAKDLYQDVSKLFESEQKANAGNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSV
LENLASKKGMNSDYVKLVRGFIGDVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSAQGRDTAGACADITDANKNLMV
YVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKNATATNTESEVIGKLAELTARAYGYYMLLDLFGRAVQLQEM
ARNIMSTQKGNKSGASPETCQLALLGEGMQHIQTLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSD
RFGKGIALRATGRI

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 52652; Mature: 52652

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTVCTRTTAACLAAAIALNPVLSWSGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEE
RWANTDDHLFTASLPKLKSGCGGIDMFLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALK
EECCCCCCEEECCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
TLAPQVADTIKTLEAITDRLNSLQLNDCKAAKALVATSASPFSSVMSDSLKAEMKTAQTD
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FMVSSGAKDLYQDVSKLFESEQKANAGNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSV
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHH
LENLASKKGMNSDYVKLVRGFIGDVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSAQ
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCC
GRDTAGACADITDANKNLMVYVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKN
CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEEC
ATATNTESEVIGKLAELTARAYGYYMLLDLFGRAVQLQEMARNIMSTQKGNKSGASPETC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
QLALLGEGMQHIQTLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSD
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGKGIALRATGRI
HHCCCEEEEECCCC
>Mature Secondary Structure
MKRTVCTRTTAACLAAAIALNPVLSWSGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEE
RWANTDDHLFTASLPKLKSGCGGIDMFLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALK
EECCCCCCEEECCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
TLAPQVADTIKTLEAITDRLNSLQLNDCKAAKALVATSASPFSSVMSDSLKAEMKTAQTD
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FMVSSGAKDLYQDVSKLFESEQKANAGNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSV
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHH
LENLASKKGMNSDYVKLVRGFIGDVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSAQ
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCC
GRDTAGACADITDANKNLMVYVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKN
CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEEC
ATATNTESEVIGKLAELTARAYGYYMLLDLFGRAVQLQEMARNIMSTQKGNKSGASPETC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
QLALLGEGMQHIQTLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSD
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGKGIALRATGRI
HHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]