Click here to switch to the map view.

The map label for this gene is yedW [C]

Identifier: 39996977

GI number: 39996977

Start: 2057966

End: 2058682

Strand: Direct

Name: yedW [C]

Synonym: GSU1879

Alternate gene names: 39996977

Gene position: 2057966-2058682 (Clockwise)

Preceding gene: 39996976

Following gene: 39996995

Centisome position: 53.96

GC content: 59.27

Gene sequence:

>717_bases
ATGACCGAGGACAAGCCGCACATTTTGCTCGTTGAAGACGAAATCCACCTGGCTCGGGGGATCTGCTTCAACCTGGAGAT
GGAAGGATACCGCGTGAGCCACGTGGAGAGCGGCGAGGCTGCTCTGGAACGGCTGACCTATGACCGGTTTGCGCTCATCA
TCCTCGACGTCATGCTGCCGGGAATCGACGGGTTCACCGTATGCGAGCGGGTGCGTGCCACCGACGCGCGCGTGCCGATA
CTCATCCTCACCGCCCGGGCCGATGACGGCGACCGGATCACGGGCCTCGATCGGGGTGCGGACGATTATCTGACCAAACC
GTTCAACCTGAACGAATTTCTTCTTCGCGTGCGCGGCATGCTGCGCCGCTCGGCTTGGTATCGGCCTGAGCCGGTGGAAG
AGGGATACCGGTTCGGCGACAACGAAGTTTTTCTCCTCTCCTACCATGCGCGGACCGCCCAAGGGGAAGTGGATTTGACC
GAACTGGAGGTCAAGATGCTGTCGCTTTTCTTTCATCGTGAGGGGGAAGCGATCCCGCGGGGAGAGATTCTGGAAAACGT
GTGGGGCTACAGTTCCGACACCGAAACCCGCACGCTCGACAATTTCATTGTCCGGCTGCGTAAGTACTTTGAGCCGAATC
CGGCAAAACCGGTCTATTTCCAGACCGTCAGGGGGGTGGGATACCGCTTTAGCAGGAAAGGTGGCAACGGGGAATAA

Upstream 100 bases:

>100_bases
TCCGGGAGCATGGAGGGCGAGTCGCCGTTTCGAGCAGAGGAAATGGCATGGGAACGACCTTCACCATTACACTCCCGCTA
GCCCGCGGAGGGGATCGTCA

Downstream 100 bases:

>100_bases
GGGGCCACAGGGGCCGCCCGGAGACTGGGAATGCAAAAGGCCGGAGGGATAACCTTCCGGCCTTTCTTGTTAGGACTAGT
ATTCGAAATCGATCCCTTAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTEDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLPGIDGFTVCERVRATDARVPI
LILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRSAWYRPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLT
ELEVKMLSLFFHREGEAIPRGEILENVWGYSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGYRFSRKGGNGE

Sequences:

>Translated_238_residues
MTEDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLPGIDGFTVCERVRATDARVPI
LILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRSAWYRPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLT
ELEVKMLSLFFHREGEAIPRGEILENVWGYSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGYRFSRKGGNGE
>Mature_237_residues
TEDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLPGIDGFTVCERVRATDARVPIL
ILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRSAWYRPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLTE
LEVKMLSLFFHREGEAIPRGEILENVWGYSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGYRFSRKGGNGE

Specific function: Probable Member Of A Two-Component Regulatory System Yedw/Yedv. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=38.2222222222222, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=35.4700854700855, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1786911, Length=225, Percent_Identity=36, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=35.0877192982456, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=34.7826086956522, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=34.6320346320346, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1788394, Length=232, Percent_Identity=32.3275862068966, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=34.2342342342342, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=32.2869955156951, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367329, Length=225, Percent_Identity=32.8888888888889, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=29.9559471365639, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=33.4801762114537, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=27.8026905829596, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI145693140, Length=237, Percent_Identity=29.1139240506329, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790437, Length=140, Percent_Identity=30, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=28.695652173913, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=114, Percent_Identity=35.0877192982456, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27370; Mature: 27239

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLP
CCCCCCCEEEEECCCHHHCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
GIDGFTVCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGM
CCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHH
LRRSAWYRPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLTELEVKMLSLFFHREGEAIPR
HHHHCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
GEILENVWGYSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGYRFSRKGGNGE
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHEEHHCCCEEEECCCCCCC
>Mature Secondary Structure 
TEDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLP
CCCCCCEEEEECCCHHHCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
GIDGFTVCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGM
CCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHH
LRRSAWYRPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLTELEVKMLSLFFHREGEAIPR
HHHHCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
GEILENVWGYSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGYRFSRKGGNGE
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHEEHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1554697 [H]