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The map label for this gene is ypmQ [H]

Identifier: 39996500

GI number: 39996500

Start: 1537339

End: 1537920

Strand: Reverse

Name: ypmQ [H]

Synonym: GSU1398

Alternate gene names: 39996500

Gene position: 1537920-1537339 (Counterclockwise)

Preceding gene: 39996501

Following gene: 39996499

Centisome position: 40.32

GC content: 56.7

Gene sequence:

>582_bases
ATGCATACCCTCATAAGACCGATCCTTCGTTCCTTCCTGGCCATTGCCGCCTGCCTTGCCCTTGCAAGTCATGCCACCGC
AGCATCCCGTTCATACCAGCGCTCCGTAGAGAGCTACAGCATGCCCGACGTGACCCTCATCAACCAGGACGGGAAAAAGG
TCCGGTTCAAGGAGCTCGTCGAATCAAACCAGCCCGTGGTGGTTGACTTCATCTTCGGCACCTGCACCACCATCTGCCCG
GTCCTGTCCGCCACCTACACCAATCTCCAGACCAAGCTGGGCCCTGACTTGAAGAAAATCCACCTGGTGTCCGTCTCCAT
CGACCCCGAAAACGACACCCCCCAGGTCATGCGCGACTACCTCGCGCGCTACCGCGCCAAGCCGGGGTGGGATTTTCTGT
CGGGCTCACGCAAGGACATCGACCGGGTCATGAACGCCTTCAATTCCTACTTTCGGAACAAAATGGACCACAAGCCCCTG
ACCTTCATCCGTTCGCCGGTCGACGGCAAATGGACAAGGATCTATGGCCTCATCAGCAACGTAGAATTGATGAATGAACT
TACCAAAGCGGGGTTGAAATGA

Upstream 100 bases:

>100_bases
CAAACCGCCGGCTGTCGGCTATGCTAATACCCAATCGTGCGTTCATCGCAACCAGCAAGTGATCCCTTTGACAAATTCGA
CCGGAGGTCATGACATCCGC

Downstream 100 bases:

>100_bases
TCTGCGTGACCGGTAAACGTCTTGCTCTTTCCGCTGTTGCCATGCTGCTCATGCTGCTGTGCTCCGCCGCGACAGGCCGC
GCCGCAGCGCCGACCGCCGC

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MHTLIRPILRSFLAIAACLALASHATAASRSYQRSVESYSMPDVTLINQDGKKVRFKELVESNQPVVVDFIFGTCTTICP
VLSATYTNLQTKLGPDLKKIHLVSVSIDPENDTPQVMRDYLARYRAKPGWDFLSGSRKDIDRVMNAFNSYFRNKMDHKPL
TFIRSPVDGKWTRIYGLISNVELMNELTKAGLK

Sequences:

>Translated_193_residues
MHTLIRPILRSFLAIAACLALASHATAASRSYQRSVESYSMPDVTLINQDGKKVRFKELVESNQPVVVDFIFGTCTTICP
VLSATYTNLQTKLGPDLKKIHLVSVSIDPENDTPQVMRDYLARYRAKPGWDFLSGSRKDIDRVMNAFNSYFRNKMDHKPL
TFIRSPVDGKWTRIYGLISNVELMNELTKAGLK
>Mature_193_residues
MHTLIRPILRSFLAIAACLALASHATAASRSYQRSVESYSMPDVTLINQDGKKVRFKELVESNQPVVVDFIFGTCTTICP
VLSATYTNLQTKLGPDLKKIHLVSVSIDPENDTPQVMRDYLARYRAKPGWDFLSGSRKDIDRVMNAFNSYFRNKMDHKPL
TFIRSPVDGKWTRIYGLISNVELMNELTKAGLK

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21831; Mature: 21831

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTLIRPILRSFLAIAACLALASHATAASRSYQRSVESYSMPDVTLINQDGKKVRFKELV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
ESNQPVVVDFIFGTCTTICPVLSATYTNLQTKLGPDLKKIHLVSVSIDPENDTPQVMRDY
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHH
LARYRAKPGWDFLSGSRKDIDRVMNAFNSYFRNKMDHKPLTFIRSPVDGKWTRIYGLISN
HHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHH
VELMNELTKAGLK
HHHHHHHHHHCCC
>Mature Secondary Structure
MHTLIRPILRSFLAIAACLALASHATAASRSYQRSVESYSMPDVTLINQDGKKVRFKELV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
ESNQPVVVDFIFGTCTTICPVLSATYTNLQTKLGPDLKKIHLVSVSIDPENDTPQVMRDY
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHH
LARYRAKPGWDFLSGSRKDIDRVMNAFNSYFRNKMDHKPLTFIRSPVDGKWTRIYGLISN
HHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHH
VELMNELTKAGLK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]