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The map label for this gene is ymdB [C]

Identifier: 39995633

GI number: 39995633

Start: 560342

End: 560863

Strand: Reverse

Name: ymdB [C]

Synonym: GSU0526

Alternate gene names: 39995633

Gene position: 560863-560342 (Counterclockwise)

Preceding gene: 39995634

Following gene: 39995632

Centisome position: 14.7

GC content: 69.35

Gene sequence:

>522_bases
ATGAAGGGAAAAATAGAGATCATCCCCGGCGACATCACCACGCTGGCGGTGGACGCCATTGTGAACGCGGCCAACAATTC
GCTCCTGGGCGGGGGCGGAGTGGACGGGGCCATCCACCGGGCAGCGGGGCCGGAGCTGCTGGCGGAGTGCCGGACCCTGA
ACGGTTGCGCCACCGGCGACGCCAAAATAACCGCGGGATACCGGCTGCCGGCGAAGCACGTGATCCACACGGTGGGGCCG
GTGTGGCACGGCGGCGCCAGGGGGGAGCCGGATTTGCTGCGGAGCTGCTACCGCCGCTCGTTTGAGGTGGCCCACGGGGC
CGGTCTCAGGTCCATCGCCTTCCCGGCCATCAGCTGCGGGGTCTACGGCTATCCCCTGGATGAGGCGTGCTCCATCGCCC
TGGAGGAGACTAAGGCGGCCCTGGAGCGCTACCCGGAACTGGAGCGGGTGATCTTCACCCCCTTCGGCGCGGAGGCGGAG
GCGGCCTACCGGGCGGCTCTCGCGCGGGTGTTCGGCCCATGA

Upstream 100 bases:

>100_bases
GGTGTTCGCTCGCACGAATGCGACTCGGCTGCATGACAGAAGGCAACCGGCTGCGGGCGCATTCTTGAGCCGGTCCCTCA
TGGGGCAGAGAGGAGATGGC

Downstream 100 bases:

>100_bases
AGGCGGTGATCCAGCGGGTAAGCGAGGCCCGGGTGGAGGTGGACGGGTCAACGGTGGGAGCCATCGGCCGGGGGATTCTG
GTTCTTCTCGGAGTGGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKGKIEIIPGDITTLAVDAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGDAKITAGYRLPAKHVIHTVGP
VWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCGVYGYPLDEACSIALEETKAALERYPELERVIFTPFGAEAE
AAYRAALARVFGP

Sequences:

>Translated_173_residues
MKGKIEIIPGDITTLAVDAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGDAKITAGYRLPAKHVIHTVGP
VWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCGVYGYPLDEACSIALEETKAALERYPELERVIFTPFGAEAE
AAYRAALARVFGP
>Mature_173_residues
MKGKIEIIPGDITTLAVDAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGDAKITAGYRLPAKHVIHTVGP
VWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCGVYGYPLDEACSIALEETKAALERYPELERVIFTPFGAEAE
AAYRAALARVFGP

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=177, Percent_Identity=53.6723163841808, Blast_Score=171, Evalue=2e-43,
Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=53.2163742690059, Blast_Score=171, Evalue=4e-43,
Organism=Homo sapiens, GI207450721, Length=173, Percent_Identity=36.9942196531792, Blast_Score=110, Evalue=9e-25,
Organism=Homo sapiens, GI8923143, Length=173, Percent_Identity=36.9942196531792, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI154813199, Length=122, Percent_Identity=44.2622950819672, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI226371718, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371716, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371714, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371712, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371710, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371706, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI20336746, Length=177, Percent_Identity=30.5084745762712, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI93141018, Length=180, Percent_Identity=30, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI93141020, Length=180, Percent_Identity=30, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI4758496, Length=180, Percent_Identity=30, Blast_Score=71, Evalue=6e-13,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=50.2890173410405, Blast_Score=155, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17538214, Length=156, Percent_Identity=50.6410256410256, Blast_Score=146, Evalue=5e-36,
Organism=Drosophila melanogaster, GI24586353, Length=136, Percent_Identity=37.5, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18130; Mature: 18130

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGKIEIIPGDITTLAVDAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGD
CCCEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCC
AKITAGYRLPAKHVIHTVGPVWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCG
CEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
VYGYPLDEACSIALEETKAALERYPELERVIFTPFGAEAEAAYRAALARVFGP
CCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGKIEIIPGDITTLAVDAIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGD
CCCEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCC
AKITAGYRLPAKHVIHTVGPVWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCG
CEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
VYGYPLDEACSIALEETKAALERYPELERVIFTPFGAEAEAAYRAALARVFGP
CCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]