| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is dinG [H]
Identifier: 39995471
GI number: 39995471
Start: 394457
End: 396979
Strand: Reverse
Name: dinG [H]
Synonym: GSU0363
Alternate gene names: 39995471
Gene position: 396979-394457 (Counterclockwise)
Preceding gene: 39995472
Following gene: 39995469
Centisome position: 10.41
GC content: 65.4
Gene sequence:
>2523_bases ATGAAACGTTACTTTTCGGAACAGGCCATCCTCGACCTGCGCGCGGCCATCGCCGACGCCGGGGGCAACGAGGTTTTCTT CCTGGGGCGCACGGACGAGAACCTCCTCGTGGTGGAGGTGGAGCCCCTTGCCCGAGGCAACCGGGACGCCGTGGCCGCCA TCATGATTGCCACCAGCTTCGGCGACGTGGTGATCCACAACCATCCATCCGGCGTCCTCACCCCCTCCCAGGCCGACGTG GAGATCGCTTCGCTCCTGGGAAACCAGGGGGTGGGCTTCTCGATCATCGACAACCGGGCCGAGAACTGCTACCAGGTGGT TCCCCCCTTTGCCCGGCGGGAGACCCAGCGGCTGTCGTTCCCGGAGATCGAGCGGATCTTCGCGCCGGCCGGGGTGCTCA CCGACAATCTTCCCGGCTACGAATACCGGGACGAGCAGCTCAGGATGGCGTTCCGCGTCACCGAGGCCTTCAACGACGAC CGGGTGGCGGTCATCGAGGCGGGCACAGGCACAGGCAAGTCGCTGGCCTACCTGGTCCCCGCCGTTCTCTGGGCCATCCG CAACCAAGAGCGGGTGGTGGTTTCCACCAACACCATCAATCTTCAGGAACAGCTGACCCGCAAGGACATTCCCTTTCTCC AGCAGCACGCCGGCATATCCTTCAAGGCCGTGCTCGTGAAAGGGCGCTCCAACTACCTCTGCCGCCGCAAACTGGCCGCC GTCAAGGCCGAGCCGTCGCTCTTCGCCGATGACCCCGCCGCCGGCGAGCTGGAGGCCATCATCGCCTGGAGCGAGACCAC TGGGGAAGGATGCCGGAGTGATCTCTCCTTCATTCCCAAGGAGGAGGCGTGGGAGGAGGTGGCCTGCGAGGCCGACCAGT GCGGCCGGGTCCGCTGCCCCTTCTACGCCCGCTGCTTCTTTTACTCCGCCCGACGCCAGGCTGCCAGCGCCGATCTTCTG GTGGTGAACCACTCACTCCTCATGGCCGATCTGGCCCTGCGCCAGGAGGCCGGCTACCGTTCCACCGCCATCCTCCCCCC TTTCGAGCGGCTCATCGTGGACGAGGGGCACCATTTGGAGGACGTGGCCACGGGACACCTGTCGGCCCAGGTCTCCCGCA CGGGGCTGTTAAAACTCATGGGAAGACTCCAGAACCCGCGCAAGCCACAGCGCGGGCTCCTGCCCCAGTTTTCAGCAGGG CTTGTCCGGGAGATGCCCGAAGCCCTCGACGAACTCTACCGGGAACTGGCCGAACGGATCGATGGCACCCTCATCCCTCG CCGTCAGCAGTTGACCGACGGCGTCACTCGTGCCATGGACGCCATCGGGATCGCCCTCGTGGGTCACCTGTCGGAACGGG GGGGCACGACGGGCGAACGGAAACTGCGGGTGACGCCGTCGCTCTTCGGCAGCCGACTCTGGCGAGTGGTGGACGACGAG GTGCGGGAACTGGCCGCGGATATGAACGACTACGTGCGGGAACTGAAAGGAGTCCTCACGGCCTGCGTGCGTCTTCCTGA GGAGGTACGGGAAAAGCTTGCCGGGCTCCTCATCGACCTGCGGGGAATCACCGGCAGGCTCGAAGCCGTGGCCGGCGACC TGATCTTCTTCATCGGCCGCGAGGGCGAGGTTTGCCGCTGGTTTGAGGTGAAACGGGGCAAGAATGGCATGGTCGTACGG CTCTGCTCGTCTCCTCTGGAGGTGGCGGCATCCCTCAAGCGGACTCTCTTCGACGCCTTCCGGACCGTGGTCGTCACCTC CGCCACGTTGGCGGTGGGAGAGCGGTTCGACTACCTGGCCAGACGAACCGGCATCGCGCTCCTGAAACAGGATCGGGTCA CCGAACTCCTCCTGGCTTCCCCCTTCGACTACGAGCACCAGGCCTTCGTGGGGATCCCCGCCGATATCCCGGAACCTGCC TCGCGCGGCTTCCAGGAAGCCCTGGAGCTGGCCCTTCACCAGGGACTGGCCATCTCGGAGGGGCACGCCTTTGTCCTCTT CACCTCCTACGACCTGCTGGCAAAACTTTTCGGCAGGATGGCCGAGACACTGAAACGGCGAGGCCTCACCCCGCTGCGCC AGGGAGAGGTCAACCGACACCACCTCCTGGCCCGGTTCAGGCAGGAGCCCAACGCCGTGCTCTTCGGCACCGACTCCTTC TGGGAAGGAGTTGACGTCCAGGGGAAGGCTCTGGAGCTGGTGGCGCTCACACGTCTCCCCTTCAGGGTCCCCACGGAACC GGTCCTGGAGGCCAGGGCCGAGCACATCGCCGCCGGTGGGGGCGACCCCTTCATGGAATACACGGTTCCCCAGGCGGTCA TCAAGTTCAAACAGGGATTCGGACGGCTGATCAGAAGCAGAGAGGACCGGGGCGCGGTCCTCATCCTCGACAGTCGGGTC CTGACAAAAAACTACGGCGGGCATTTCCTCCGGTCACTGCCGCCCGTGCGGCTCGTGACCGGTTCTTCGGCGGAGGTCTT CGGGGCCATGGCTGACTTCTTCGCGGCCCCTCCATCCCCATAG
Upstream 100 bases:
>100_bases GTAATCCGACACCGGCATGAAGGAAGAGGGCGGAGCGATCCGCCCTTTTTCGTGCGAATCCCCTTGCCCCCGCCTCCCCC GCTCCGGTATCCTCACGGCA
Downstream 100 bases:
>100_bases TGCCGCGGCTGACCTCAGCTCTTGGCGCGCATGAGCCGCTTGGCGACCGAGTTGAAACACTGAAAGTAGGCCAGGTAGGA GAGGAGGAAGACGGCGAGGA
Product: ATP-dependent helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MKRYFSEQAILDLRAAIADAGGNEVFFLGRTDENLLVVEVEPLARGNRDAVAAIMIATSFGDVVIHNHPSGVLTPSQADV EIASLLGNQGVGFSIIDNRAENCYQVVPPFARRETQRLSFPEIERIFAPAGVLTDNLPGYEYRDEQLRMAFRVTEAFNDD RVAVIEAGTGTGKSLAYLVPAVLWAIRNQERVVVSTNTINLQEQLTRKDIPFLQQHAGISFKAVLVKGRSNYLCRRKLAA VKAEPSLFADDPAAGELEAIIAWSETTGEGCRSDLSFIPKEEAWEEVACEADQCGRVRCPFYARCFFYSARRQAASADLL VVNHSLLMADLALRQEAGYRSTAILPPFERLIVDEGHHLEDVATGHLSAQVSRTGLLKLMGRLQNPRKPQRGLLPQFSAG LVREMPEALDELYRELAERIDGTLIPRRQQLTDGVTRAMDAIGIALVGHLSERGGTTGERKLRVTPSLFGSRLWRVVDDE VRELAADMNDYVRELKGVLTACVRLPEEVREKLAGLLIDLRGITGRLEAVAGDLIFFIGREGEVCRWFEVKRGKNGMVVR LCSSPLEVAASLKRTLFDAFRTVVVTSATLAVGERFDYLARRTGIALLKQDRVTELLLASPFDYEHQAFVGIPADIPEPA SRGFQEALELALHQGLAISEGHAFVLFTSYDLLAKLFGRMAETLKRRGLTPLRQGEVNRHHLLARFRQEPNAVLFGTDSF WEGVDVQGKALELVALTRLPFRVPTEPVLEARAEHIAAGGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRV LTKNYGGHFLRSLPPVRLVTGSSAEVFGAMADFFAAPPSP
Sequences:
>Translated_840_residues MKRYFSEQAILDLRAAIADAGGNEVFFLGRTDENLLVVEVEPLARGNRDAVAAIMIATSFGDVVIHNHPSGVLTPSQADV EIASLLGNQGVGFSIIDNRAENCYQVVPPFARRETQRLSFPEIERIFAPAGVLTDNLPGYEYRDEQLRMAFRVTEAFNDD RVAVIEAGTGTGKSLAYLVPAVLWAIRNQERVVVSTNTINLQEQLTRKDIPFLQQHAGISFKAVLVKGRSNYLCRRKLAA VKAEPSLFADDPAAGELEAIIAWSETTGEGCRSDLSFIPKEEAWEEVACEADQCGRVRCPFYARCFFYSARRQAASADLL VVNHSLLMADLALRQEAGYRSTAILPPFERLIVDEGHHLEDVATGHLSAQVSRTGLLKLMGRLQNPRKPQRGLLPQFSAG LVREMPEALDELYRELAERIDGTLIPRRQQLTDGVTRAMDAIGIALVGHLSERGGTTGERKLRVTPSLFGSRLWRVVDDE VRELAADMNDYVRELKGVLTACVRLPEEVREKLAGLLIDLRGITGRLEAVAGDLIFFIGREGEVCRWFEVKRGKNGMVVR LCSSPLEVAASLKRTLFDAFRTVVVTSATLAVGERFDYLARRTGIALLKQDRVTELLLASPFDYEHQAFVGIPADIPEPA SRGFQEALELALHQGLAISEGHAFVLFTSYDLLAKLFGRMAETLKRRGLTPLRQGEVNRHHLLARFRQEPNAVLFGTDSF WEGVDVQGKALELVALTRLPFRVPTEPVLEARAEHIAAGGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRV LTKNYGGHFLRSLPPVRLVTGSSAEVFGAMADFFAAPPSP >Mature_840_residues MKRYFSEQAILDLRAAIADAGGNEVFFLGRTDENLLVVEVEPLARGNRDAVAAIMIATSFGDVVIHNHPSGVLTPSQADV EIASLLGNQGVGFSIIDNRAENCYQVVPPFARRETQRLSFPEIERIFAPAGVLTDNLPGYEYRDEQLRMAFRVTEAFNDD RVAVIEAGTGTGKSLAYLVPAVLWAIRNQERVVVSTNTINLQEQLTRKDIPFLQQHAGISFKAVLVKGRSNYLCRRKLAA VKAEPSLFADDPAAGELEAIIAWSETTGEGCRSDLSFIPKEEAWEEVACEADQCGRVRCPFYARCFFYSARRQAASADLL VVNHSLLMADLALRQEAGYRSTAILPPFERLIVDEGHHLEDVATGHLSAQVSRTGLLKLMGRLQNPRKPQRGLLPQFSAG LVREMPEALDELYRELAERIDGTLIPRRQQLTDGVTRAMDAIGIALVGHLSERGGTTGERKLRVTPSLFGSRLWRVVDDE VRELAADMNDYVRELKGVLTACVRLPEEVREKLAGLLIDLRGITGRLEAVAGDLIFFIGREGEVCRWFEVKRGKNGMVVR LCSSPLEVAASLKRTLFDAFRTVVVTSATLAVGERFDYLARRTGIALLKQDRVTELLLASPFDYEHQAFVGIPADIPEPA SRGFQEALELALHQGLAISEGHAFVLFTSYDLLAKLFGRMAETLKRRGLTPLRQGEVNRHHLLARFRQEPNAVLFGTDSF WEGVDVQGKALELVALTRLPFRVPTEPVLEARAEHIAAGGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRV LTKNYGGHFLRSLPPVRLVTGSSAEVFGAMADFFAAPPSP
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=269, Percent_Identity=37.9182156133829, Blast_Score=178, Evalue=1e-45, Organism=Escherichia coli, GI1787018, Length=741, Percent_Identity=27.1255060728745, Blast_Score=176, Evalue=4e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 92884; Mature: 92884
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS01302 RADC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYFSEQAILDLRAAIADAGGNEVFFLGRTDENLLVVEVEPLARGNRDAVAAIMIATSF CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECC GDVVIHNHPSGVLTPSQADVEIASLLGNQGVGFSIIDNRAENCYQVVPPFARRETQRLSF CCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHCCCHHHHHHHCCCC PEIERIFAPAGVLTDNLPGYEYRDEQLRMAFRVTEAFNDDRVAVIEAGTGTGKSLAYLVP HHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH AVLWAIRNQERVVVSTNTINLQEQLTRKDIPFLQQHAGISFKAVLVKGRSNYLCRRKLAA HHHHHHCCCCEEEEEECEECHHHHHHHCCCCHHHHHCCCEEEEEEEECCCCHHHHHHHHH VKAEPSLFADDPAAGELEAIIAWSETTGEGCRSDLSFIPKEEAWEEVACEADQCGRVRCP HCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCCC FYARCFFYSARRQAASADLLVVNHSLLMADLALRQEAGYRSTAILPPFERLIVDEGHHLE HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCHH DVATGHLSAQVSRTGLLKLMGRLQNPRKPQRGLLPQFSAGLVREMPEALDELYRELAERI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC DGTLIPRRQQLTDGVTRAMDAIGIALVGHLSERGGTTGERKLRVTPSLFGSRLWRVVDDE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH VRELAADMNDYVRELKGVLTACVRLPEEVREKLAGLLIDLRGITGRLEAVAGDLIFFIGR HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEECCCCCHHHHHHHCCEEEEECC EGEVCRWFEVKRGKNGMVVRLCSSPLEVAASLKRTLFDAFRTVVVTSATLAVGERFDYLA CCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRTGIALLKQDRVTELLLASPFDYEHQAFVGIPADIPEPASRGFQEALELALHQGLAISE HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEC GHAFVLFTSYDLLAKLFGRMAETLKRRGLTPLRQGEVNRHHLLARFRQEPNAVLFGTDSF CCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC WEGVDVQGKALELVALTRLPFRVPTEPVLEARAEHIAAGGGDPFMEYTVPQAVIKFKQGF CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH GRLIRSREDRGAVLILDSRVLTKNYGGHFLRSLPPVRLVTGSSAEVFGAMADFFAAPPSP HHHHHCCCCCCEEEEEECEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKRYFSEQAILDLRAAIADAGGNEVFFLGRTDENLLVVEVEPLARGNRDAVAAIMIATSF CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECC GDVVIHNHPSGVLTPSQADVEIASLLGNQGVGFSIIDNRAENCYQVVPPFARRETQRLSF CCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHCCCHHHHHHHCCCC PEIERIFAPAGVLTDNLPGYEYRDEQLRMAFRVTEAFNDDRVAVIEAGTGTGKSLAYLVP HHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH AVLWAIRNQERVVVSTNTINLQEQLTRKDIPFLQQHAGISFKAVLVKGRSNYLCRRKLAA HHHHHHCCCCEEEEEECEECHHHHHHHCCCCHHHHHCCCEEEEEEEECCCCHHHHHHHHH VKAEPSLFADDPAAGELEAIIAWSETTGEGCRSDLSFIPKEEAWEEVACEADQCGRVRCP HCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCCC FYARCFFYSARRQAASADLLVVNHSLLMADLALRQEAGYRSTAILPPFERLIVDEGHHLE HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCHH DVATGHLSAQVSRTGLLKLMGRLQNPRKPQRGLLPQFSAGLVREMPEALDELYRELAERI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC DGTLIPRRQQLTDGVTRAMDAIGIALVGHLSERGGTTGERKLRVTPSLFGSRLWRVVDDE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH VRELAADMNDYVRELKGVLTACVRLPEEVREKLAGLLIDLRGITGRLEAVAGDLIFFIGR HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEECCCCCHHHHHHHCCEEEEECC EGEVCRWFEVKRGKNGMVVRLCSSPLEVAASLKRTLFDAFRTVVVTSATLAVGERFDYLA CCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRTGIALLKQDRVTELLLASPFDYEHQAFVGIPADIPEPASRGFQEALELALHQGLAISE HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEC GHAFVLFTSYDLLAKLFGRMAETLKRRGLTPLRQGEVNRHHLLARFRQEPNAVLFGTDSF CCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC WEGVDVQGKALELVALTRLPFRVPTEPVLEARAEHIAAGGGDPFMEYTVPQAVIKFKQGF CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH GRLIRSREDRGAVLILDSRVLTKNYGGHFLRSLPPVRLVTGSSAEVFGAMADFFAAPPSP HHHHHCCCCCCEEEEEECEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]