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The map label for this gene is radA [H]

Identifier: 38234541

GI number: 38234541

Start: 2024799

End: 2026190

Strand: Direct

Name: radA [H]

Synonym: DIP1977

Alternate gene names: 38234541

Gene position: 2024799-2026190 (Clockwise)

Preceding gene: 38234532

Following gene: 38234544

Centisome position: 81.36

GC content: 56.68

Gene sequence:

>1392_bases
ATGGCTAAAAAAGCACGTAGCTCGCATATATGCTCCGAATGCGGATATACCTCACCGAAATGGTTGGGGCGCTGCCCAGA
CTGTGGCGCATGGGGAACTTTCCAAGAACATCAGGTGACAACGAGCTCTGCGGCACCGAGTGTGAGCGCCAAACCTATTG
GGCTTACCCCCACTAGCCCCGCTCAGTCGATAACGCGTATCGACGCCACCCGTTCCAGCACGCAATCCACCGGAATTGGG
GAGCTTGACCGTGTATTAGGCTCCGGCATAGTCCCAGGCTCTGTCGTTTTACTCGCTGGTGAGCCAGGCGTGGGCAAATC
CACCCTGCTGCTTGAGGTCGCCAGCAAGTGGGCTCAGCAGAAACAAGGATCAAGCAACCGCACAGCGCTGTATATCACTG
CCGAAGAATCTGCGGGGCAAGTTCGTATGCGTGCTGAGCGCACAGGAGCATTACAGGATTCTTTGTATTTAGCGGCGGAA
TCCAATCTGGACATCGTGTTTGGCCATGTAGAACAGATCAAACCAAGCCTGCTGATCATCGACTCCGTTCAAACCATGCA
GGCAAGTGGTGTGGAAGGTGTCGCAGGCGGCGTGGCGCAATCGCGTGCCGTGACAGCGGCAATCACCAGCCTTGCCAAAA
CCACGGGGATCCCCTGTCTGTTGGTAGGTCACGTGACTAAAGACGGCAACGTGGCAGGCCCGCGCGTACTAGAGCACCTA
GTCGATGTCGTTCTTAACTTTGAGGGTGACCGCCACTCCAGCCTGCGCATGCTCCGCGGCATTAAGAATCGTTTTGGCGC
AACCGATGAGGTCGGCTGCTTTGAGCAGCATTCTGATGGCATACGTGAGGTTCCAGACCCCTCTGGGCTTTTCCTCTCCC
ATCATGGCAGCACACCAGATGGCACAGCAGTAACCGTAGCCATGGATGGCGTTCGTCCCATCGTCGCGGAGGTCCAAGCC
CTTGTGGTTCCCACGGAGGCGAAAAATCCTCGGCGTGCTGTCACAGGCCTTGATCCCACGCGCGTTCCCATGGTCTTAGC
GGTTTTAGCCGCACGCGCCGGAAAACGCACCCATAGCAGCGAGGTTTACGTTGCCACCGTTGGCGGTATGAAGGTGGGAG
AACCTGCCACCGACTTGGCTATTGCGCTCGCCACAGCCAGTGCCCTGAATAAGAAGGCCATTGCAGAAAAAACTGTGGTT
CTTGGCGAGGTAGGTCTAGCAGGCGAGATCCGTCGAGTGCCTAATATCCAGCGCCGGCTCATGGAGGCCCAACGGCTGGG
CTATAAGCGCGCTATTATCCCTGTGTCTGACCCCAGTGAAACAAAGGTTGCCGGAATTAAGGTGATACAAGTAAGCGACA
TCCGAGAAGCTCTGGATGTCGCTGTGGGATAG

Upstream 100 bases:

>100_bases
CCCCGCACGGAGCCCCTCTCCCCCACGTTGACACCCCACCGAAATACATTCGAACACGCCAACTCGATCGAATGTCATAG
CCATAGTTTATGGTGTTCCC

Downstream 100 bases:

>100_bases
CACGCCTAGGCCTGGAATCAGCCGCGTTTAACTTGCAATATTAAAGGTGTAAGCGGGCGAGGGCTTAGAACCCACCACCG
CGTGGAGGAAGTATCCGCCA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MAKKARSSHICSECGYTSPKWLGRCPDCGAWGTFQEHQVTTSSAAPSVSAKPIGLTPTSPAQSITRIDATRSSTQSTGIG
ELDRVLGSGIVPGSVVLLAGEPGVGKSTLLLEVASKWAQQKQGSSNRTALYITAEESAGQVRMRAERTGALQDSLYLAAE
SNLDIVFGHVEQIKPSLLIIDSVQTMQASGVEGVAGGVAQSRAVTAAITSLAKTTGIPCLLVGHVTKDGNVAGPRVLEHL
VDVVLNFEGDRHSSLRMLRGIKNRFGATDEVGCFEQHSDGIREVPDPSGLFLSHHGSTPDGTAVTVAMDGVRPIVAEVQA
LVVPTEAKNPRRAVTGLDPTRVPMVLAVLAARAGKRTHSSEVYVATVGGMKVGEPATDLAIALATASALNKKAIAEKTVV
LGEVGLAGEIRRVPNIQRRLMEAQRLGYKRAIIPVSDPSETKVAGIKVIQVSDIREALDVAVG

Sequences:

>Translated_463_residues
MAKKARSSHICSECGYTSPKWLGRCPDCGAWGTFQEHQVTTSSAAPSVSAKPIGLTPTSPAQSITRIDATRSSTQSTGIG
ELDRVLGSGIVPGSVVLLAGEPGVGKSTLLLEVASKWAQQKQGSSNRTALYITAEESAGQVRMRAERTGALQDSLYLAAE
SNLDIVFGHVEQIKPSLLIIDSVQTMQASGVEGVAGGVAQSRAVTAAITSLAKTTGIPCLLVGHVTKDGNVAGPRVLEHL
VDVVLNFEGDRHSSLRMLRGIKNRFGATDEVGCFEQHSDGIREVPDPSGLFLSHHGSTPDGTAVTVAMDGVRPIVAEVQA
LVVPTEAKNPRRAVTGLDPTRVPMVLAVLAARAGKRTHSSEVYVATVGGMKVGEPATDLAIALATASALNKKAIAEKTVV
LGEVGLAGEIRRVPNIQRRLMEAQRLGYKRAIIPVSDPSETKVAGIKVIQVSDIREALDVAVG
>Mature_462_residues
AKKARSSHICSECGYTSPKWLGRCPDCGAWGTFQEHQVTTSSAAPSVSAKPIGLTPTSPAQSITRIDATRSSTQSTGIGE
LDRVLGSGIVPGSVVLLAGEPGVGKSTLLLEVASKWAQQKQGSSNRTALYITAEESAGQVRMRAERTGALQDSLYLAAES
NLDIVFGHVEQIKPSLLIIDSVQTMQASGVEGVAGGVAQSRAVTAAITSLAKTTGIPCLLVGHVTKDGNVAGPRVLEHLV
DVVLNFEGDRHSSLRMLRGIKNRFGATDEVGCFEQHSDGIREVPDPSGLFLSHHGSTPDGTAVTVAMDGVRPIVAEVQAL
VVPTEAKNPRRAVTGLDPTRVPMVLAVLAARAGKRTHSSEVYVATVGGMKVGEPATDLAIALATASALNKKAIAEKTVVL
GEVGLAGEIRRVPNIQRRLMEAQRLGYKRAIIPVSDPSETKVAGIKVIQVSDIREALDVAVG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=465, Percent_Identity=41.505376344086, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48487; Mature: 48356

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKARSSHICSECGYTSPKWLGRCPDCGAWGTFQEHQVTTSSAAPSVSAKPIGLTPTSP
CCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
AQSITRIDATRSSTQSTGIGELDRVLGSGIVPGSVVLLAGEPGVGKSTLLLEVASKWAQQ
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
KQGSSNRTALYITAEESAGQVRMRAERTGALQDSLYLAAESNLDIVFGHVEQIKPSLLII
HCCCCCCEEEEEEECCCCCCEEEEHHHCCCCCCCEEEEECCCCEEEECCHHHCCCCEEEE
DSVQTMQASGVEGVAGGVAQSRAVTAAITSLAKTTGIPCLLVGHVTKDGNVAGPRVLEHL
ECHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH
VDVVLNFEGDRHSSLRMLRGIKNRFGATDEVGCFEQHSDGIREVPDPSGLFLSHHGSTPD
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCC
GTAVTVAMDGVRPIVAEVQALVVPTEAKNPRRAVTGLDPTRVPMVLAVLAARAGKRTHSS
CCEEEEEECCCHHHHHCCEEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
EVYVATVGGMKVGEPATDLAIALATASALNKKAIAEKTVVLGEVGLAGEIRRVPNIQRRL
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHCCHHHHHH
MEAQRLGYKRAIIPVSDPSETKVAGIKVIQVSDIREALDVAVG
HHHHHCCCCEEEEECCCCCCCEEEEEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure 
AKKARSSHICSECGYTSPKWLGRCPDCGAWGTFQEHQVTTSSAAPSVSAKPIGLTPTSP
CCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
AQSITRIDATRSSTQSTGIGELDRVLGSGIVPGSVVLLAGEPGVGKSTLLLEVASKWAQQ
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
KQGSSNRTALYITAEESAGQVRMRAERTGALQDSLYLAAESNLDIVFGHVEQIKPSLLII
HCCCCCCEEEEEEECCCCCCEEEEHHHCCCCCCCEEEEECCCCEEEECCHHHCCCCEEEE
DSVQTMQASGVEGVAGGVAQSRAVTAAITSLAKTTGIPCLLVGHVTKDGNVAGPRVLEHL
ECHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH
VDVVLNFEGDRHSSLRMLRGIKNRFGATDEVGCFEQHSDGIREVPDPSGLFLSHHGSTPD
HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCC
GTAVTVAMDGVRPIVAEVQALVVPTEAKNPRRAVTGLDPTRVPMVLAVLAARAGKRTHSS
CCEEEEEECCCHHHHHCCEEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
EVYVATVGGMKVGEPATDLAIALATASALNKKAIAEKTVVLGEVGLAGEIRRVPNIQRRL
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHCCHHHHHH
MEAQRLGYKRAIIPVSDPSETKVAGIKVIQVSDIREALDVAVG
HHHHHCCCCEEEEECCCCCCCEEEEEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]