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The map label for this gene is cydB [H]

Identifier: 38234469

GI number: 38234469

Start: 1952261

End: 1953235

Strand: Direct

Name: cydB [H]

Synonym: DIP1899

Alternate gene names: 38234469

Gene position: 1952261-1953235 (Clockwise)

Preceding gene: 38234468

Following gene: 38234470

Centisome position: 78.45

GC content: 53.64

Gene sequence:

>975_bases
ATGGATCTTCAAACAGTGTGGTTTGTGTTAGTTGCGATTCTATTCGCTGGTTACTTTGTCCTCGAAGGCTTTGACTTCGG
TGTGGGTATGTTGCTGCCGTTTTTGAGCAAGCAGGAGCGTACCGCTGCGATTAAAGCCATTGGACCTGTGTGGGATGGCA
ATGAAGTGTGGCTCATTACTGCAGGTGGCGCACTTTTTGCGGCTTTCCCTGAGTGGTATGCCACCATGTTTTCGGGTTTC
TACCTGCCATTGTTCCTCATTTTGATCGGATTGATTCTGCGCGGCGTTGCTTTGGAGTGGCGCGGCAAGGTTGACACTGA
TGTCTGGCGTGATCGTTGCGACATCGGCATTGGTATCGGTAGCTGGGTTCCCGCTTTGTTGTGGGGTGTGGCGTTTGCCA
ATGTTGTTCATGGTGTGGCTATCGATTCTTCGTTCCATATTGATTCCAGCCTGACTGGGCTTATCGCTTTGCTCAACCCG
TTTGGTTTGCTCGGCGGCGTGGCGTTTGTGCTGGTGTTCTTGCTACATGGTGCGCTGTTCCTCAAGCTTAAGACTGAGAT
TACGGTCATGGGTTCCTTGGCTGGTCGGTTGTTTATTCCGGCGGCAGTTGTGGGCGCAGTGTTTTTGGTGTGGACTCAGC
TCGCACATGGTCGTGGCTGGACGTGGGCACCGTTGGTTATCGCAGTGGTTGGCTTGGTCGTTGCGGCGCTAGGTATTCGT
GGCAATCGTGATGGTTGGGCATTTGCGGCAACCTCGGTGGTGATTCTTTGCGTCGCAGCGGTGTTGTTTGGATCGTTGTT
CCCGAACTTGATGCCCACCACGCTTGCCGACGGCACCAGCTTGACCATTTACAATGCGTCTTCTTCGCAGTACACGCTCA
CCATGATGACATGGGCTGCTGTGCTGGTCACACCACTGGTGCTTCTGTACCAGGGCTGGACGTACTGGGTCTTTAGGCAA
CGAGTGCGCGTGTGA

Upstream 100 bases:

>100_bases
CTTGGCTATGGTCCTCACAGTAGCGATCACGACGAATCCCCTGCCGATGATCTGTTGCACCTCGGCGCTCATGCTACGGA
AGGTAAGGAGTAACACGATC

Downstream 100 bases:

>100_bases
ACATCCGGTTTTTAACGTTGATTCGCCCCGCGCGAACGTTCATTGTGATTGCTGCTGTTATTCAAGTAGCGTCCGTGGCG
TTCGTCGTGGGGCGCGGCCT

Product: putative cytochrome ubiquinol oxidase subunit

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MDLQTVWFVLVAILFAGYFVLEGFDFGVGMLLPFLSKQERTAAIKAIGPVWDGNEVWLITAGGALFAAFPEWYATMFSGF
YLPLFLILIGLILRGVALEWRGKVDTDVWRDRCDIGIGIGSWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLNP
FGLLGGVAFVLVFLLHGALFLKLKTEITVMGSLAGRLFIPAAVVGAVFLVWTQLAHGRGWTWAPLVIAVVGLVVAALGIR
GNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTLADGTSLTIYNASSSQYTLTMMTWAAVLVTPLVLLYQGWTYWVFRQ
RVRV

Sequences:

>Translated_324_residues
MDLQTVWFVLVAILFAGYFVLEGFDFGVGMLLPFLSKQERTAAIKAIGPVWDGNEVWLITAGGALFAAFPEWYATMFSGF
YLPLFLILIGLILRGVALEWRGKVDTDVWRDRCDIGIGIGSWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLNP
FGLLGGVAFVLVFLLHGALFLKLKTEITVMGSLAGRLFIPAAVVGAVFLVWTQLAHGRGWTWAPLVIAVVGLVVAALGIR
GNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTLADGTSLTIYNASSSQYTLTMMTWAAVLVTPLVLLYQGWTYWVFRQ
RVRV
>Mature_324_residues
MDLQTVWFVLVAILFAGYFVLEGFDFGVGMLLPFLSKQERTAAIKAIGPVWDGNEVWLITAGGALFAAFPEWYATMFSGF
YLPLFLILIGLILRGVALEWRGKVDTDVWRDRCDIGIGIGSWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLNP
FGLLGGVAFVLVFLLHGALFLKLKTEITVMGSLAGRLFIPAAVVGAVFLVWTQLAHGRGWTWAPLVIAVVGLVVAALGIR
GNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTLADGTSLTIYNASSSQYTLTMMTWAAVLVTPLVLLYQGWTYWVFRQ
RVRV

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=37.6373626373626, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1787213, Length=353, Percent_Identity=32.5779036827195, Blast_Score=165, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35178; Mature: 35178

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQTVWFVLVAILFAGYFVLEGFDFGVGMLLPFLSKQERTAAIKAIGPVWDGNEVWLIT
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
AGGALFAAFPEWYATMFSGFYLPLFLILIGLILRGVALEWRGKVDTDVWRDRCDIGIGIG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHH
SWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLNPFGLLGGVAFVLVFLLHGALF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKLKTEITVMGSLAGRLFIPAAVVGAVFLVWTQLAHGRGWTWAPLVIAVVGLVVAALGIR
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
GNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTLADGTSLTIYNASSSQYTLTMMTWAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCCEEHHHHHHHH
VLVTPLVLLYQGWTYWVFRQRVRV
HHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MDLQTVWFVLVAILFAGYFVLEGFDFGVGMLLPFLSKQERTAAIKAIGPVWDGNEVWLIT
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
AGGALFAAFPEWYATMFSGFYLPLFLILIGLILRGVALEWRGKVDTDVWRDRCDIGIGIG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHH
SWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLNPFGLLGGVAFVLVFLLHGALF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKLKTEITVMGSLAGRLFIPAAVVGAVFLVWTQLAHGRGWTWAPLVIAVVGLVVAALGIR
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
GNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTLADGTSLTIYNASSSQYTLTMMTWAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCCEEHHHHHHHH
VLVTPLVLLYQGWTYWVFRQRVRV
HHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]