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The map label for this gene is cydA [H]

Identifier: 38234468

GI number: 38234468

Start: 1950742

End: 1952253

Strand: Direct

Name: cydA [H]

Synonym: DIP1898

Alternate gene names: 38234468

Gene position: 1950742-1952253 (Clockwise)

Preceding gene: 38234467

Following gene: 38234469

Centisome position: 78.39

GC content: 54.37

Gene sequence:

>1512_bases
ATGGACTTAGTGGATGTTTCACGGTGGCAGTTCGGTATTACGACTGTGTACCACTTTCTTTTCGTACCGCTGACAATCGG
CTTGGCTCCGATCGTCGCAGCGATGCAAACTGCTTGGTTTATTACCAAGAAAGACATGTGGCTTCGTTCTACAAAGTTCT
TTGGCACACTTTTTCTCGTGAACTTCGCCATGGGCGTAGTCACTGGCATTGTTCAAGAGTTCCAATTTGGCATGAACTGG
AGCGAGTACTCCCGCTTTGTGGGAGACGTATTCGGCGCACCTCTTGCGCTCGAAGGTTTGATTGCCTTCTTCATCGAGTC
CACATTCCTAGGATTGTGGATTTTTGGTTGGGGTCGCCTCCCCAAGGCAGTCCACTTGGCGTCGATTTGGTTAGTCGCGA
TCGCTGTCAACGTGTCGGCTTACTTCATCATCGTGGCCAACTCGTTTATGCAGCACCCCGTCGGTGCGCGGTTTAACCCA
GAAACGGGTCGTGCCGAGCTCGTGTCGTTAGGCAAGCTTTTGGCCAACCCCACCGCTTTGGCTGCATGGCCGCATGCGGT
AACCGGTTCCCTGCTCACCGGTGGCACCTTTGTTGCTGGTATCGCTGGGTGGTGGATGATTCGTGAGCGTCTGGCACAGC
GGACAGAGGATGCTGCGTTTTGGCGTAAGAATTTCCGGTTGGGTGCATGGACCACGTTGGCTAGTGTGGCGGGTTTGTCG
CTCACCGGTGATATCCAAGGCAAGCTGATGTTTGTTCAGCAGCCCATGAAGATGGCCGCTGCGGAATCACTGTGCGAGAC
AGAGCTCGATCCTTCGTTCTCGGTGCTCTCGGTAGGTACGCACAATAACTGCGAGTCCGTTAAGCACTTGATCGACGTGC
CGGGCGTGCTCAGTATTTTGTCGCAGAACAAGCTCAGTGGCGTCACCCTAGAGGGTGTTAATCAGCTGCAGGAAAAGTAC
GAGGCTTTGTACGGTCCTGGCAACTACGTTCCCAACTTGTTTGTCACCTACTGGTCATTCCGCGCAATGATCGGCCTGAT
GGCGGCGTCGGTAGTGTTGGCGATCGTTGGTTTATGGATGACTCGCAAGGGTCGCATTCCGCAACTGCGCTGGTTGGGTA
CCGCAGCTCTTATCGCTGTACCGTTCCCGTTCTTAGCTAACTCCGCTGGTTGGATCTTTACCGAAATGGGTCGCCAGCCG
TGGATCGTGGCTCCTAATCCGGAGGCTACCCCCGGCAGCCCTGACGGCGAAGATCTCATTCATTTGATCGTTGACTTTGG
TGTTTCCTCGCACCCGACTTGGGTGGTCTGGACTTCTCTGATTGGTTTCACCTTGGTGTATGGATCGCTTGCCTGCGTGT
GGTTCTGGCTGATGAAGAAGAAGGTTGTGGCCGGAGCCAGCGAGGATTCTTCAAGCATGCTTGGCTATGGTCCTCACAGT
AGCGATCACGACGAATCCCCTGCCGATGATCTGTTGCACCTCGGCGCTCATGCTACGGAAGGTAAGGAGTAA

Upstream 100 bases:

>100_bases
GGGCGTGCAGTAGATACGAATGGTCGCCAAGCCGTCATCCCCTCGTGTCGTGTGCATGCCATCATGGTGACCTCGAATGA
TCGCAGAAAGTTCTCCTCTG

Downstream 100 bases:

>100_bases
CACGATCATGGATCTTCAAACAGTGTGGTTTGTGTTAGTTGCGATTCTATTCGCTGGTTACTTTGTCCTCGAAGGCTTTG
ACTTCGGTGTGGGTATGTTG

Product: putative cytochrome ubiquinol oxidase subunit

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MDLVDVSRWQFGITTVYHFLFVPLTIGLAPIVAAMQTAWFITKKDMWLRSTKFFGTLFLVNFAMGVVTGIVQEFQFGMNW
SEYSRFVGDVFGAPLALEGLIAFFIESTFLGLWIFGWGRLPKAVHLASIWLVAIAVNVSAYFIIVANSFMQHPVGARFNP
ETGRAELVSLGKLLANPTALAAWPHAVTGSLLTGGTFVAGIAGWWMIRERLAQRTEDAAFWRKNFRLGAWTTLASVAGLS
LTGDIQGKLMFVQQPMKMAAAESLCETELDPSFSVLSVGTHNNCESVKHLIDVPGVLSILSQNKLSGVTLEGVNQLQEKY
EALYGPGNYVPNLFVTYWSFRAMIGLMAASVVLAIVGLWMTRKGRIPQLRWLGTAALIAVPFPFLANSAGWIFTEMGRQP
WIVAPNPEATPGSPDGEDLIHLIVDFGVSSHPTWVVWTSLIGFTLVYGSLACVWFWLMKKKVVAGASEDSSSMLGYGPHS
SDHDESPADDLLHLGAHATEGKE

Sequences:

>Translated_503_residues
MDLVDVSRWQFGITTVYHFLFVPLTIGLAPIVAAMQTAWFITKKDMWLRSTKFFGTLFLVNFAMGVVTGIVQEFQFGMNW
SEYSRFVGDVFGAPLALEGLIAFFIESTFLGLWIFGWGRLPKAVHLASIWLVAIAVNVSAYFIIVANSFMQHPVGARFNP
ETGRAELVSLGKLLANPTALAAWPHAVTGSLLTGGTFVAGIAGWWMIRERLAQRTEDAAFWRKNFRLGAWTTLASVAGLS
LTGDIQGKLMFVQQPMKMAAAESLCETELDPSFSVLSVGTHNNCESVKHLIDVPGVLSILSQNKLSGVTLEGVNQLQEKY
EALYGPGNYVPNLFVTYWSFRAMIGLMAASVVLAIVGLWMTRKGRIPQLRWLGTAALIAVPFPFLANSAGWIFTEMGRQP
WIVAPNPEATPGSPDGEDLIHLIVDFGVSSHPTWVVWTSLIGFTLVYGSLACVWFWLMKKKVVAGASEDSSSMLGYGPHS
SDHDESPADDLLHLGAHATEGKE
>Mature_503_residues
MDLVDVSRWQFGITTVYHFLFVPLTIGLAPIVAAMQTAWFITKKDMWLRSTKFFGTLFLVNFAMGVVTGIVQEFQFGMNW
SEYSRFVGDVFGAPLALEGLIAFFIESTFLGLWIFGWGRLPKAVHLASIWLVAIAVNVSAYFIIVANSFMQHPVGARFNP
ETGRAELVSLGKLLANPTALAAWPHAVTGSLLTGGTFVAGIAGWWMIRERLAQRTEDAAFWRKNFRLGAWTTLASVAGLS
LTGDIQGKLMFVQQPMKMAAAESLCETELDPSFSVLSVGTHNNCESVKHLIDVPGVLSILSQNKLSGVTLEGVNQLQEKY
EALYGPGNYVPNLFVTYWSFRAMIGLMAASVVLAIVGLWMTRKGRIPQLRWLGTAALIAVPFPFLANSAGWIFTEMGRQP
WIVAPNPEATPGSPDGEDLIHLIVDFGVSSHPTWVVWTSLIGFTLVYGSLACVWFWLMKKKVVAGASEDSSSMLGYGPHS
SDHDESPADDLLHLGAHATEGKE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=489, Percent_Identity=35.9918200408998, Blast_Score=289, Evalue=2e-79,
Organism=Escherichia coli, GI1787212, Length=488, Percent_Identity=35.655737704918, Blast_Score=275, Evalue=3e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 55129; Mature: 55129

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure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CCCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]