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The map label for this gene is cydC [H]

Identifier: 38234470

GI number: 38234470

Start: 1953232

End: 1954803

Strand: Direct

Name: cydC [H]

Synonym: DIP1900

Alternate gene names: 38234470

Gene position: 1953232-1954803 (Clockwise)

Preceding gene: 38234469

Following gene: 38234471

Centisome position: 78.49

GC content: 56.81

Gene sequence:

>1572_bases
GTGAACATCCGGTTTTTAACGTTGATTCGCCCCGCGCGAACGTTCATTGTGATTGCTGCTGTTATTCAAGTAGCGTCCGT
GGCGTTCGTCGTGGGGCGCGGCCTTTCTGTGGGGTTTTTGGTCGCGGGCACTATTGAGAACTGGCCGGATCCTATGCCTC
ATGTTGGAGCATGGGCTGCGGTGTTGGTGATCAGTGTTGTCGGTGTGAGTGCGATGGCATGGATGCAGCGCTGGTGGTCT
GCAACAGGTGCTGGCCCTGTTATTACAGATGTACGTTCCCGCACGTTAACGGCGCTGAATGCTACGGATCCTAGGGTGGT
GCAGGAAAACAGCAGTCGATGGAAGGTGGTTTTGGGGGCGGGTCCGGAAAGTGTTGAGGGGCTACGCCCGTATTTATCGA
CATATATTCCGGCGGCTTTGTCCTCGGGGATTTCTACGCCGATTGTGCTGGCCGTCATCGCGCTTATCGACGTCCGCTCT
GCTCTGCTCGCAGCAGCAACGCTGGTGTTGATCCCTATTTTTATGATTTTGATCGGCACGCTCACACGAGATCAAACACA
ACAACGTCTCCATCGAGCCCAAGTGTTGGACCGCCACATCATTGATTTGTTGCGCGGTGCTCGCACGCTCCAAGAAATCG
GCGATACGTCTGCAGCACAATCACAAGTACACAGCAGTGGGCGTCGGCACGCCGCTGCAACGATGTCGGTTCTGCGCTTG
GCTTTCCTGTCATCTTTTGCTCTGGAATTTGTGGCCACTCTTTCGGTAGCGCTTGTTGCCGTAAGCATCGGCGTGCGCTT
GGTTGATTCCTCGATGACGCTCCACGCAGGTCTTATCGCATTAATCTTGGCACCCGAGGTGTATAACCCGCTACGGGCAG
TAGGCACCGCTTATCATTCATCGGCCGATGGCATGACAGCAGTAGAAACCGCCCTGGACCTTATCGAGTCCACACCGCAA
ACTGCCAACGTTGCACCGCTGAAAACCGCCACGGTTGTTTCGGACGGTGAGGTGAGCGTCGATAAGCTCAGTGTGCATGG
CCGTGACGGCATCCGCCCACACAATCTAAGTTTTCAAGCCCGCCCAGGCGAGGTGACGGCCCTCATCGGCAGCAATGGTT
GTGGAAAATCCACAACGCTGCTCGCCATCATGGGCATGATCAATTACGAAGGCACGATTGCTGCACCGCACAACATCGGA
TACCTCCCGGCGCGCCCTGCCCTGTGCACGGGAACGCTGGCTGACAACCTCTCGTTGTTGGGGCCGCGTGACCGCGACAC
CGCTGGAGCGTTGTTGCGCACAATCGGATGTGATATTCCGCTTTCGCGCACCGTGACTTACCAAGGCGAGGGCCTATCGA
GTGGGCAAATTGAACGGTTGGCTTTCGCACGCACCTGTTCGCAGGAATGCGCCGTGTATCTTTTCGACGAACCCACCGCC
CACGTGGACCCTGAAACTGCGAGGAAAATGTGGGAGCACATCCGCAGTCTTGCCCGCGACGGTGCCACGGTGATCGTAGC
GACCCACGACCTTGCTAATCGCGACTATGCCGACCAGGTGATTGTCCTATGA

Upstream 100 bases:

>100_bases
ACACGCTCACCATGATGACATGGGCTGCTGTGCTGGTCACACCACTGGTGCTTCTGTACCAGGGCTGGACGTACTGGGTC
TTTAGGCAACGAGTGCGCGT

Downstream 100 bases:

>100_bases
AACCCACCGACTTGTTATTTCAGCATGTTTCCCGCCGTGCCCTTGCCGGCGCGATTGCTATCGCCTCGCTGACGTTGCTG
AGTTCGCTTGGGCTGATGGT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MNIRFLTLIRPARTFIVIAAVIQVASVAFVVGRGLSVGFLVAGTIENWPDPMPHVGAWAAVLVISVVGVSAMAWMQRWWS
ATGAGPVITDVRSRTLTALNATDPRVVQENSSRWKVVLGAGPESVEGLRPYLSTYIPAALSSGISTPIVLAVIALIDVRS
ALLAAATLVLIPIFMILIGTLTRDQTQQRLHRAQVLDRHIIDLLRGARTLQEIGDTSAAQSQVHSSGRRHAAATMSVLRL
AFLSSFALEFVATLSVALVAVSIGVRLVDSSMTLHAGLIALILAPEVYNPLRAVGTAYHSSADGMTAVETALDLIESTPQ
TANVAPLKTATVVSDGEVSVDKLSVHGRDGIRPHNLSFQARPGEVTALIGSNGCGKSTTLLAIMGMINYEGTIAAPHNIG
YLPARPALCTGTLADNLSLLGPRDRDTAGALLRTIGCDIPLSRTVTYQGEGLSSGQIERLAFARTCSQECAVYLFDEPTA
HVDPETARKMWEHIRSLARDGATVIVATHDLANRDYADQVIVL

Sequences:

>Translated_523_residues
MNIRFLTLIRPARTFIVIAAVIQVASVAFVVGRGLSVGFLVAGTIENWPDPMPHVGAWAAVLVISVVGVSAMAWMQRWWS
ATGAGPVITDVRSRTLTALNATDPRVVQENSSRWKVVLGAGPESVEGLRPYLSTYIPAALSSGISTPIVLAVIALIDVRS
ALLAAATLVLIPIFMILIGTLTRDQTQQRLHRAQVLDRHIIDLLRGARTLQEIGDTSAAQSQVHSSGRRHAAATMSVLRL
AFLSSFALEFVATLSVALVAVSIGVRLVDSSMTLHAGLIALILAPEVYNPLRAVGTAYHSSADGMTAVETALDLIESTPQ
TANVAPLKTATVVSDGEVSVDKLSVHGRDGIRPHNLSFQARPGEVTALIGSNGCGKSTTLLAIMGMINYEGTIAAPHNIG
YLPARPALCTGTLADNLSLLGPRDRDTAGALLRTIGCDIPLSRTVTYQGEGLSSGQIERLAFARTCSQECAVYLFDEPTA
HVDPETARKMWEHIRSLARDGATVIVATHDLANRDYADQVIVL
>Mature_523_residues
MNIRFLTLIRPARTFIVIAAVIQVASVAFVVGRGLSVGFLVAGTIENWPDPMPHVGAWAAVLVISVVGVSAMAWMQRWWS
ATGAGPVITDVRSRTLTALNATDPRVVQENSSRWKVVLGAGPESVEGLRPYLSTYIPAALSSGISTPIVLAVIALIDVRS
ALLAAATLVLIPIFMILIGTLTRDQTQQRLHRAQVLDRHIIDLLRGARTLQEIGDTSAAQSQVHSSGRRHAAATMSVLRL
AFLSSFALEFVATLSVALVAVSIGVRLVDSSMTLHAGLIALILAPEVYNPLRAVGTAYHSSADGMTAVETALDLIESTPQ
TANVAPLKTATVVSDGEVSVDKLSVHGRDGIRPHNLSFQARPGEVTALIGSNGCGKSTTLLAIMGMINYEGTIAAPHNIG
YLPARPALCTGTLADNLSLLGPRDRDTAGALLRTIGCDIPLSRTVTYQGEGLSSGQIERLAFARTCSQECAVYLFDEPTA
HVDPETARKMWEHIRSLARDGATVIVATHDLANRDYADQVIVL

Specific function: Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system [H]

COG id: COG4988

COG function: function code CO; ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI157502203, Length=179, Percent_Identity=29.0502793296089, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI90421313, Length=431, Percent_Identity=24.8259860788863, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI89111135, Length=178, Percent_Identity=26.9662921348315, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI157502201, Length=177, Percent_Identity=29.3785310734463, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI21729876, Length=181, Percent_Identity=25.414364640884, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI21729873, Length=181, Percent_Identity=25.414364640884, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI15149474, Length=181, Percent_Identity=25.414364640884, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI148612844, Length=192, Percent_Identity=30.7291666666667, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI255708477, Length=192, Percent_Identity=30.7291666666667, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI9955970, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI9955963, Length=268, Percent_Identity=26.4925373134328, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI134142335, Length=181, Percent_Identity=28.1767955801105, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI134142337, Length=181, Percent_Identity=28.1767955801105, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI6005701, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI27436953, Length=187, Percent_Identity=26.7379679144385, Blast_Score=69, Evalue=2e-11,
Organism=Escherichia coli, GI1787113, Length=470, Percent_Identity=30.2127659574468, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI87081782, Length=184, Percent_Identity=29.8913043478261, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787112, Length=225, Percent_Identity=29.7777777777778, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17569081, Length=180, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25146765, Length=183, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71992066, Length=183, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71992070, Length=183, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI86564969, Length=183, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=264, Percent_Identity=26.8939393939394, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17567243, Length=181, Percent_Identity=28.7292817679558, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32566680, Length=194, Percent_Identity=27.319587628866, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=189, Percent_Identity=29.1005291005291, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=190, Percent_Identity=28.9473684210526, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=273, Percent_Identity=24.9084249084249, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6320339, Length=182, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI62484234, Length=179, Percent_Identity=29.608938547486, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24585091, Length=177, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI45552437, Length=202, Percent_Identity=30.1980198019802, Blast_Score=79, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24585557, Length=202, Percent_Identity=30.1980198019802, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45550390, Length=177, Percent_Identity=28.2485875706215, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161078426, Length=178, Percent_Identity=26.9662921348315, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648279, Length=178, Percent_Identity=26.9662921348315, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI161077321, Length=182, Percent_Identity=28.021978021978, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221460257, Length=178, Percent_Identity=28.6516853932584, Blast_Score=76, Evalue=6e-14,
Organism=Drosophila melanogaster, GI45552361, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552341, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24583969, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552363, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552339, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552355, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552337, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552335, Length=342, Percent_Identity=22.5146198830409, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574259, Length=177, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17136662, Length=252, Percent_Identity=27.3809523809524, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552357, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45552347, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24653245, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45552359, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550972, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552349, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552343, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552351, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552353, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI281363262, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552345, Length=347, Percent_Identity=22.1902017291066, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR014216
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 55616; Mature: 55616

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRFLTLIRPARTFIVIAAVIQVASVAFVVGRGLSVGFLVAGTIENWPDPMPHVGAWAA
CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHH
VLVISVVGVSAMAWMQRWWSATGAGPVITDVRSRTLTALNATDPRVVQENSSRWKVVLGA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCCCCCEECCCCCEEEEECC
GPESVEGLRPYLSTYIPAALSSGISTPIVLAVIALIDVRSALLAAATLVLIPIFMILIGT
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRDQTQQRLHRAQVLDRHIIDLLRGARTLQEIGDTSAAQSQVHSSGRRHAAATMSVLRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
AFLSSFALEFVATLSVALVAVSIGVRLVDSSMTLHAGLIALILAPEVYNPLRAVGTAYHS
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
SADGMTAVETALDLIESTPQTANVAPLKTATVVSDGEVSVDKLSVHGRDGIRPHNLSFQA
CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEEE
RPGEVTALIGSNGCGKSTTLLAIMGMINYEGTIAAPHNIGYLPARPALCTGTLADNLSLL
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEECHHHCCCHHC
GPRDRDTAGALLRTIGCDIPLSRTVTYQGEGLSSGQIERLAFARTCSQECAVYLFDEPTA
CCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
HVDPETARKMWEHIRSLARDGATVIVATHDLANRDYADQVIVL
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEC
>Mature Secondary Structure
MNIRFLTLIRPARTFIVIAAVIQVASVAFVVGRGLSVGFLVAGTIENWPDPMPHVGAWAA
CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHH
VLVISVVGVSAMAWMQRWWSATGAGPVITDVRSRTLTALNATDPRVVQENSSRWKVVLGA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCCCCCEECCCCCEEEEECC
GPESVEGLRPYLSTYIPAALSSGISTPIVLAVIALIDVRSALLAAATLVLIPIFMILIGT
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRDQTQQRLHRAQVLDRHIIDLLRGARTLQEIGDTSAAQSQVHSSGRRHAAATMSVLRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
AFLSSFALEFVATLSVALVAVSIGVRLVDSSMTLHAGLIALILAPEVYNPLRAVGTAYHS
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
SADGMTAVETALDLIESTPQTANVAPLKTATVVSDGEVSVDKLSVHGRDGIRPHNLSFQA
CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEEE
RPGEVTALIGSNGCGKSTTLLAIMGMINYEGTIAAPHNIGYLPARPALCTGTLADNLSLL
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEECHHHCCCHHC
GPRDRDTAGALLRTIGCDIPLSRTVTYQGEGLSSGQIERLAFARTCSQECAVYLFDEPTA
CCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
HVDPETARKMWEHIRSLARDGATVIVATHDLANRDYADQVIVL
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]