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The map label for this gene is rimP

Identifier: 38234061

GI number: 38234061

Start: 1501074

End: 1501628

Strand: Reverse

Name: rimP

Synonym: DIP1480

Alternate gene names: 38234061

Gene position: 1501628-1501074 (Counterclockwise)

Preceding gene: 38234063

Following gene: 38234060

Centisome position: 60.34

GC content: 46.49

Gene sequence:

>555_bases
ATGGCGTTTCCTACGGTAGAAGTATTAACTGAGCTTGTTACTCCAGTTGTTGCGCAACACAATATGGACTTAGAGGGTAT
CCGAATCAATAAAGCGGGTAAAAAGTCGCTCGTTGCAGTTTCCGTTGACTCTGATTTTCGCCCTGACCTTGACCAATTAG
AACTTGTATCAAATCAAATATCTGAGGTATTTGATGCTGGTGAAGCCGCAGGTGAGCTGAGTTTTGGTGCAGGATATACT
CTGGAGGTAGGAACTCCAGGTTTAGATCAACCACTTGCTAGTGCACGCAGGTGGCGCCGTAATCGACACAGGTTAGTCGC
CCTCGAAGTTGAAGGTAAAAAGTCTGTAGAGCGAATCGGTGCCCTTAACGACGACGAGACTGCGGTCATTGTAGTGAAGC
GTCGGGGTAAAAAACTCGTCGTCCGTAGTGTTCAATTGGCAGAAAACACACAAGCGGTGGTAGAAATTGAATTCGCTAAA
CCTGCGGAAGATGAGTTAGCTTTAACCGCACTCGAATTTGATCAAGCCCTTGATAGGGGAGAGGAAAACAAGTGA

Upstream 100 bases:

>100_bases
CTGAGATCGCACTTGTTGTTGATCGCTGAAGAAAAATCACCTCACGCATTCTACCGGTCTTCAGTGGAATGAGTTTCGTT
GAACAGCTACCATAACCACC

Downstream 100 bases:

>100_bases
ATATTGACGTCCAAGCGCTGAAAGCAATTGAAGCGGATAGAAACATCGCTGTTGATGAATTGCTTGAAACAATTGCACGG
GCTCTTCTGTTTGCGTACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MAFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQISEVFDAGEAAGELSFGAGYT
LEVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIGALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAK
PAEDELALTALEFDQALDRGEENK

Sequences:

>Translated_184_residues
MAFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQISEVFDAGEAAGELSFGAGYT
LEVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIGALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAK
PAEDELALTALEFDQALDRGEENK
>Mature_183_residues
AFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQISEVFDAGEAAGELSFGAGYTL
EVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIGALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKP
AEDELALTALEFDQALDRGEENK

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_CORDI (Q6NGM9)

Other databases:

- EMBL:   BX248358
- RefSeq:   NP_939828.1
- ProteinModelPortal:   Q6NGM9
- GeneID:   2650365
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1480
- NMPDR:   fig|257309.1.peg.1419
- HOGENOM:   HBG668072
- OMA:   STTQSER
- ProtClustDB:   PRK00092
- BioCyc:   CDIP257309:DIP1480-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 20163; Mature: 20032

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQI
CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
SEVFDAGEAAGELSFGAGYTLEVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIG
HHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHC
ALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALTALEFDQALDRG
CCCCCCEEEEEEECCCCEEEHHHHHHCCCCEEEEEEEECCCCCCHHEEHHHHHHHHHCCC
EENK
CCCC
>Mature Secondary Structure 
AFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQI
CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
SEVFDAGEAAGELSFGAGYTLEVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIG
HHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHC
ALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALTALEFDQALDRG
CCCCCCEEEEEEECCCCEEEHHHHHHCCCCEEEEEEEECCCCCCHHEEHHHHHHHHHCCC
EENK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910