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The map label for this gene is whiA

Identifier: 38233897

GI number: 38233897

Start: 1322488

End: 1323474

Strand: Reverse

Name: whiA

Synonym: DIP1311

Alternate gene names: 38233897

Gene position: 1323474-1322488 (Counterclockwise)

Preceding gene: 38233898

Following gene: 38233896

Centisome position: 53.18

GC content: 49.24

Gene sequence:

>987_bases
GTGGGAGCTCTTTCTGCTCAAGTTAAAGATGAACTGATCAAGGTGTCATCTACAAAACAGAGGTCTCGCATCGCCGAACT
TGCTTCGATCATTAGATTTGCTGGGTCTATTGATTCTGCGCTCGGAAAGACTGTAATAGAAATCGAACTAGATAACGAAG
CCGTTGCAATTCGTGTTGCGAAAGAAATAGAGGAGTTATTTGCTATTTCTGCCAAGTTGGTGGATTTAGGGCCGATGGCA
ACACGTCGGACTCCACGACATGTGGTACGCATCGCCGAGGATGCAGAAACTTTGATTCGTCGAGTTGGGTTAGTAACTCG
TAGCGGCCATGCGGTAGTAGGGCTACCGCCTCAGATAATATCTGGATCAATTTCTGATGCTGAGGCTGCGTGGCGTGGTG
CTTTCTTGGCTGCAGGCCAGCTTTCTGACCCAGGTAGGACTTCAGGTTTGGAAGTTGCATGTCCTTGCCTAGAAGCATCT
TTAGCTTTGGTTGGATGTGCTCGCAGGTTGGGTTTGTCAGCTAAACCCAAAGAGACTCGTGGGGTAGAAAAAGTTGTCAT
TCGAGATGGTGAAGCAGTTGGGGCATTGCTATCTCGAATGGGAGCACATAAAACGCGACTTGTGTGGGATCAAAAACGAG
CACGAAGAGAGGCGCGACCTTTAGGAAACCGATTAGCTAATTTTGATGACGCAAATCTGCGTAGATCGGCGCGAGCGGCG
GTAGCTGCGGCAGCGCGTGTGGAAAGAGCTATGACAATTCTTGGTGATGATGTTCCCGACCACTTGGCCCAAGCTGGCCA
ATTGCGTGTACAACATCGGCAGGCTTCCTTGGAAGAGCTAGGCCGATTAGCGGATCCCCAGATGACCAAAGACGCTGTAG
CTGGAAGAATTCGCAGATTGCTGCATATGGCAGATAAAAAGGCTTCTGACATGGGAATTCCGGATACATCAGTAGTCGTA
ACTGAGGAACTTCTGGACGACTTCTAA

Upstream 100 bases:

>100_bases
GCTTTAGGACGCATACGTGGGCGCGTTAATATAGAGTTTTCGCCCTTGACTTTGCCGCATTGCGCACCAAACATTAACTA
AAACGTGAAGGAACGGATAC

Downstream 100 bases:

>100_bases
AACATTAAAAAGCCGATGTGATAACCTTCACATCGGCTTTTTAATGTGGCAAAGTGTGGGCGTAGGTCATGGTTCGTGAT
GTGAACTCTATACCTCTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MGALSAQVKDELIKVSSTKQRSRIAELASIIRFAGSIDSALGKTVIEIELDNEAVAIRVAKEIEELFAISAKLVDLGPMA
TRRTPRHVVRIAEDAETLIRRVGLVTRSGHAVVGLPPQIISGSISDAEAAWRGAFLAAGQLSDPGRTSGLEVACPCLEAS
LALVGCARRLGLSAKPKETRGVEKVVIRDGEAVGALLSRMGAHKTRLVWDQKRARREARPLGNRLANFDDANLRRSARAA
VAAAARVERAMTILGDDVPDHLAQAGQLRVQHRQASLEELGRLADPQMTKDAVAGRIRRLLHMADKKASDMGIPDTSVVV
TEELLDDF

Sequences:

>Translated_328_residues
MGALSAQVKDELIKVSSTKQRSRIAELASIIRFAGSIDSALGKTVIEIELDNEAVAIRVAKEIEELFAISAKLVDLGPMA
TRRTPRHVVRIAEDAETLIRRVGLVTRSGHAVVGLPPQIISGSISDAEAAWRGAFLAAGQLSDPGRTSGLEVACPCLEAS
LALVGCARRLGLSAKPKETRGVEKVVIRDGEAVGALLSRMGAHKTRLVWDQKRARREARPLGNRLANFDDANLRRSARAA
VAAAARVERAMTILGDDVPDHLAQAGQLRVQHRQASLEELGRLADPQMTKDAVAGRIRRLLHMADKKASDMGIPDTSVVV
TEELLDDF
>Mature_327_residues
GALSAQVKDELIKVSSTKQRSRIAELASIIRFAGSIDSALGKTVIEIELDNEAVAIRVAKEIEELFAISAKLVDLGPMAT
RRTPRHVVRIAEDAETLIRRVGLVTRSGHAVVGLPPQIISGSISDAEAAWRGAFLAAGQLSDPGRTSGLEVACPCLEASL
ALVGCARRLGLSAKPKETRGVEKVVIRDGEAVGALLSRMGAHKTRLVWDQKRARREARPLGNRLANFDDANLRRSARAAV
AAAARVERAMTILGDDVPDHLAQAGQLRVQHRQASLEELGRLADPQMTKDAVAGRIRRLLHMADKKASDMGIPDTSVVVT
EELLDDF

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_CORDI (Q6NH34)

Other databases:

- EMBL:   BX248357
- RefSeq:   NP_939664.1
- GeneID:   2649865
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1311
- NMPDR:   fig|257309.1.peg.1255
- HOGENOM:   HBG322392
- ProtClustDB:   CLSK871931
- BioCyc:   CDIP257309:DIP1311-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 35284; Mature: 35153

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSAQVKDELIKVSSTKQRSRIAELASIIRFAGSIDSALGKTVIEIELDNEAVAIRVA
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEHHHH
KEIEELFAISAKLVDLGPMATRRTPRHVVRIAEDAETLIRRVGLVTRSGHAVVGLPPQII
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
SGSISDAEAAWRGAFLAAGQLSDPGRTSGLEVACPCLEASLALVGCARRLGLSAKPKETR
CCCCCHHHHHHHHHHEECCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCHHC
GVEKVVIRDGEAVGALLSRMGAHKTRLVWDQKRARREARPLGNRLANFDDANLRRSARAA
CCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VAAAARVERAMTILGDDVPDHLAQAGQLRVQHRQASLEELGRLADPQMTKDAVAGRIRRL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LHMADKKASDMGIPDTSVVVTEELLDDF
HHHHHCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
GALSAQVKDELIKVSSTKQRSRIAELASIIRFAGSIDSALGKTVIEIELDNEAVAIRVA
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEHHHH
KEIEELFAISAKLVDLGPMATRRTPRHVVRIAEDAETLIRRVGLVTRSGHAVVGLPPQII
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
SGSISDAEAAWRGAFLAAGQLSDPGRTSGLEVACPCLEASLALVGCARRLGLSAKPKETR
CCCCCHHHHHHHHHHEECCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCHHC
GVEKVVIRDGEAVGALLSRMGAHKTRLVWDQKRARREARPLGNRLANFDDANLRRSARAA
CCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VAAAARVERAMTILGDDVPDHLAQAGQLRVQHRQASLEELGRLADPQMTKDAVAGRIRRL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LHMADKKASDMGIPDTSVVVTEELLDDF
HHHHHCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910