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The map label for this gene is sufD [C]

Identifier: 38233879

GI number: 38233879

Start: 1301742

End: 1302917

Strand: Reverse

Name: sufD [C]

Synonym: DIP1294

Alternate gene names: 38233879

Gene position: 1302917-1301742 (Counterclockwise)

Preceding gene: 38233880

Following gene: 38233878

Centisome position: 52.35

GC content: 48.81

Gene sequence:

>1176_bases
ATGTCGACAAATAAAGCCGCAACCGTGCACAACAACAAGGGCGATCTTTTTAGCTCTTTTAACGTTGAAGATTTTGATAC
GCCACATGGCAAAGACGAAGTTTGGCGATTCATATCGCTTCGTCGTCTCAGAGGCCTGCATAATGGTCGTTTTGCGCAAG
CTGTCCCTGCTGAAATTGCAATTGATGCACCTGAAAACGGAGTGAAAGTCGAACGCGTTGCAAAAACAGACGCGAAAGTA
GGACGTGCCGGTGCACCGATTGATAGGGTATCCGCGCAGGCATTCACTAGCAGCAAGGAAGCTTATGTTGTAACTGTTGC
ACGTAATGCCGTTGTTACAGAGCCGATTAAAATTTCTGTTACTGGCCAAGGTAACGATGCCACCTCATTTGGACATATCG
TCATTGACGTAGAAGCAAATGCTGAAGCTCTTGTAGATTTGCGCTATACAGGTACTGGCACCCATGCTGACAACGTTGAA
TTCCTCATCGGTGACAACGCACGACTCACAGTGATTGTTGATGCATCTTGGGATAATACTGCGGTACACCTTTCGGGGCA
GCAAGCAGTATTAGGGCGAGATGCAGTTCTTCGACACAATGTGGCAGTTTTCGGTGGCGAAGTAGTCCGCCTCGTTCCCC
GTGTGAAATTTACGCAGCCAGGCGGAGACGCCGAGATGTTGGGTATCTACTTTGCTGATGATGGACAGTACTTTGAACAG
CGTTTGCTGGTAGACCATGCTGTTCCACAATGCCGTTCGAACGTCCTTTACAAGGGGGCAATTCAAGGCGATAAAAACTC
TCCGCTTCCCGACGCTCACGCAACATGGGTCGGTGATGTACTGATTCGTTCTGGTGCCCAGGGCACAGATACCTACGAGG
CTAACCGCAACCTTGTTTTAACAGATGGGGCACGTGCCGACGCAATTCCAAACTTGGAAATTGAAACTGGCGATATTGCA
GGTGCCGGTCATGCTGCTACGGTGGGTCGTTTTGATGATGAGCATGAGTTCTACCTTCGATCTCGTGGTATCCCACAAGA
TGAAGCTCGCCGCCTCATCATCCGTGGTTTCTTCTCAGAAGTGATCAACAGAATTCCAGTTGATTCAGTTCGTGAAGACC
TGGAAAATCGTGTGTCAGAAGAACTCAAAACCTTCCAGAACAGTCGAAACGCCTAA

Upstream 100 bases:

>100_bases
GTGGCTTTGTTGAGCCGATTGCAAAAGAACTCCCAATGGAGTACGCACTCGAACTCAATCGCCTGATCGAATTGCAGATG
GAAGGATCGGTGGGCTAAAC

Downstream 100 bases:

>100_bases
AATCTACAAACGGAAAGCACATCCCACTATGAGCACTCTTGAAATCAAAAATCTCCACGCCCAAGTTGTACCCGCTGATG
AAAGCGCAGCACCAAAGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSTNKAATVHNNKGDLFSSFNVEDFDTPHGKDEVWRFISLRRLRGLHNGRFAQAVPAEIAIDAPENGVKVERVAKTDAKV
GRAGAPIDRVSAQAFTSSKEAYVVTVARNAVVTEPIKISVTGQGNDATSFGHIVIDVEANAEALVDLRYTGTGTHADNVE
FLIGDNARLTVIVDASWDNTAVHLSGQQAVLGRDAVLRHNVAVFGGEVVRLVPRVKFTQPGGDAEMLGIYFADDGQYFEQ
RLLVDHAVPQCRSNVLYKGAIQGDKNSPLPDAHATWVGDVLIRSGAQGTDTYEANRNLVLTDGARADAIPNLEIETGDIA
GAGHAATVGRFDDEHEFYLRSRGIPQDEARRLIIRGFFSEVINRIPVDSVREDLENRVSEELKTFQNSRNA

Sequences:

>Translated_391_residues
MSTNKAATVHNNKGDLFSSFNVEDFDTPHGKDEVWRFISLRRLRGLHNGRFAQAVPAEIAIDAPENGVKVERVAKTDAKV
GRAGAPIDRVSAQAFTSSKEAYVVTVARNAVVTEPIKISVTGQGNDATSFGHIVIDVEANAEALVDLRYTGTGTHADNVE
FLIGDNARLTVIVDASWDNTAVHLSGQQAVLGRDAVLRHNVAVFGGEVVRLVPRVKFTQPGGDAEMLGIYFADDGQYFEQ
RLLVDHAVPQCRSNVLYKGAIQGDKNSPLPDAHATWVGDVLIRSGAQGTDTYEANRNLVLTDGARADAIPNLEIETGDIA
GAGHAATVGRFDDEHEFYLRSRGIPQDEARRLIIRGFFSEVINRIPVDSVREDLENRVSEELKTFQNSRNA
>Mature_390_residues
STNKAATVHNNKGDLFSSFNVEDFDTPHGKDEVWRFISLRRLRGLHNGRFAQAVPAEIAIDAPENGVKVERVAKTDAKVG
RAGAPIDRVSAQAFTSSKEAYVVTVARNAVVTEPIKISVTGQGNDATSFGHIVIDVEANAEALVDLRYTGTGTHADNVEF
LIGDNARLTVIVDASWDNTAVHLSGQQAVLGRDAVLRHNVAVFGGEVVRLVPRVKFTQPGGDAEMLGIYFADDGQYFEQR
LLVDHAVPQCRSNVLYKGAIQGDKNSPLPDAHATWVGDVLIRSGAQGTDTYEANRNLVLTDGARADAIPNLEIETGDIAG
AGHAATVGRFDDEHEFYLRSRGIPQDEARRLIIRGFFSEVINRIPVDSVREDLENRVSEELKTFQNSRNA

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=392, Percent_Identity=26.530612244898, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 42583; Mature: 42452

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNKAATVHNNKGDLFSSFNVEDFDTPHGKDEVWRFISLRRLRGLHNGRFAQAVPAEIA
CCCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
IDAPENGVKVERVAKTDAKVGRAGAPIDRVSAQAFTSSKEAYVVTVARNAVVTEPIKISV
EECCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEECCEEEEE
TGQGNDATSFGHIVIDVEANAEALVDLRYTGTGTHADNVEFLIGDNARLTVIVDASWDNT
EECCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCE
AVHLSGQQAVLGRDAVLRHNVAVFGGEVVRLVPRVKFTQPGGDAEMLGIYFADDGQYFEQ
EEEECCCEEECCCCHHHHCCEEEECCHHEEEECCEEEECCCCCCEEEEEEEECCCHHHHH
RLLVDHAVPQCRSNVLYKGAIQGDKNSPLPDAHATWVGDVLIRSGAQGTDTYEANRNLVL
HHHHHHHCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEEE
TDGARADAIPNLEIETGDIAGAGHAATVGRFDDEHEFYLRSRGIPQDEARRLIIRGFFSE
ECCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCHHHEECCCCCHHHHHHHHHHHHHHH
VINRIPVDSVREDLENRVSEELKTFQNSRNA
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STNKAATVHNNKGDLFSSFNVEDFDTPHGKDEVWRFISLRRLRGLHNGRFAQAVPAEIA
CCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
IDAPENGVKVERVAKTDAKVGRAGAPIDRVSAQAFTSSKEAYVVTVARNAVVTEPIKISV
EECCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEECCEEEEE
TGQGNDATSFGHIVIDVEANAEALVDLRYTGTGTHADNVEFLIGDNARLTVIVDASWDNT
EECCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCE
AVHLSGQQAVLGRDAVLRHNVAVFGGEVVRLVPRVKFTQPGGDAEMLGIYFADDGQYFEQ
EEEECCCEEECCCCHHHHCCEEEECCHHEEEECCEEEECCCCCCEEEEEEEECCCHHHHH
RLLVDHAVPQCRSNVLYKGAIQGDKNSPLPDAHATWVGDVLIRSGAQGTDTYEANRNLVL
HHHHHHHCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEEE
TDGARADAIPNLEIETGDIAGAGHAATVGRFDDEHEFYLRSRGIPQDEARRLIIRGFFSE
ECCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCHHHEECCCCCHHHHHHHHHHHHHHH
VINRIPVDSVREDLENRVSEELKTFQNSRNA
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]