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The map label for this gene is yiaD [H]

Identifier: 37680143

GI number: 37680143

Start: 1950994

End: 1951665

Strand: Direct

Name: yiaD [H]

Synonym: VV1959

Alternate gene names: 37680143

Gene position: 1950994-1951665 (Clockwise)

Preceding gene: 37680142

Following gene: 37680144

Centisome position: 58.16

GC content: 49.85

Gene sequence:

>672_bases
ATGACTTTGAAAAAAGTTTCTATTGCTTTAGCGATTCTTCTGACTCTAAGCGGATGTCAGGCAACTCAACGTCAGAATGC
AACCACTGGCGAATCTGAAACCAACTCAGCCACTAAAGGCGCACTGATTGGCGCAATTGCAGGCGCAGTCGCTGGCGCGG
CAACGGGCGACAAAAAAGATCGTGGTAAACGTGCCCTGATCGGCGCAGCAGGCGGAGCCGCTATTGGTGGTGGTGTTGGC
TACTACTTTGACCAACAAGAGAAAGCACTGCGTGAAGCACTGCTTAATTCTGGCGTTCAGGTCGAACGTGTTGGCGAAAA
TCAATTGCTGTTACGTCTTGAAAATGGCATCGGTTTTAGCTCAAGCTCTTATGCTCTGGATAGCAGCATTCACAATACCC
TTAAAGGTGTAGCGCAAATCTTAGTTGAGTACCCAGATACCAGCTTAGTCATCGATGGTTTTACTGACAGTACAGGCAAT
GATGCCTCTAACCAAATTCTCTCTGAGCGTCGCGCTGAATCCGTCCGTAGCTTCCTGATTTCTCAAAACGTTGCTGCAGG
CCGAGCCGTCGCACGAGGCAACGGTGAGCGCTACCCTCTTTGCACCAACAGCACTGCAGAAGGCCGAGCTTGTAACCGCC
GTGTCGAGATACAAATCCTACCACTTAAGTAA

Upstream 100 bases:

>100_bases
ACAAATCGAAAAAAGATAACCTTACACTGACATTTCTCTCATTGACTTGCTGAATAATCCGCACGGAGGCAGCAGTTAGC
CTCTGAATGTACATGGAGAG

Downstream 100 bases:

>100_bases
TAACGTAAATATGGCAATTTTGGCTTAGCTGCTGATTTCACATTAGGTTCAGTCTATAATTTGGGCTGAACCTAACCTCT
AGAGATCCCATTTTGCGCAA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTLKKVSIALAILLTLSGCQATQRQNATTGESETNSATKGALIGAIAGAVAGAATGDKKDRGKRALIGAAGGAAIGGGVG
YYFDQQEKALREALLNSGVQVERVGENQLLLRLENGIGFSSSSYALDSSIHNTLKGVAQILVEYPDTSLVIDGFTDSTGN
DASNQILSERRAESVRSFLISQNVAAGRAVARGNGERYPLCTNSTAEGRACNRRVEIQILPLK

Sequences:

>Translated_223_residues
MTLKKVSIALAILLTLSGCQATQRQNATTGESETNSATKGALIGAIAGAVAGAATGDKKDRGKRALIGAAGGAAIGGGVG
YYFDQQEKALREALLNSGVQVERVGENQLLLRLENGIGFSSSSYALDSSIHNTLKGVAQILVEYPDTSLVIDGFTDSTGN
DASNQILSERRAESVRSFLISQNVAAGRAVARGNGERYPLCTNSTAEGRACNRRVEIQILPLK
>Mature_222_residues
TLKKVSIALAILLTLSGCQATQRQNATTGESETNSATKGALIGAIAGAVAGAATGDKKDRGKRALIGAAGGAAIGGGVGY
YFDQQEKALREALLNSGVQVERVGENQLLLRLENGIGFSSSSYALDSSIHNTLKGVAQILVEYPDTSLVIDGFTDSTGND
ASNQILSERRAESVRSFLISQNVAAGRAVARGNGERYPLCTNSTAEGRACNRRVEIQILPLK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=222, Percent_Identity=48.6486486486487, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI1787191, Length=87, Percent_Identity=42.5287356321839, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23256; Mature: 23125

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKKVSIALAILLTLSGCQATQRQNATTGESETNSATKGALIGAIAGAVAGAATGDKKD
CCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
RGKRALIGAAGGAAIGGGVGYYFDQQEKALREALLNSGVQVERVGENQLLLRLENGIGFS
CCCEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCC
SSSYALDSSIHNTLKGVAQILVEYPDTSLVIDGFTDSTGNDASNQILSERRAESVRSFLI
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
SQNVAAGRAVARGNGERYPLCTNSTAEGRACNRRVEIQILPLK
HCCCHHCHHEECCCCCCCCEECCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
TLKKVSIALAILLTLSGCQATQRQNATTGESETNSATKGALIGAIAGAVAGAATGDKKD
CHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
RGKRALIGAAGGAAIGGGVGYYFDQQEKALREALLNSGVQVERVGENQLLLRLENGIGFS
CCCEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCC
SSSYALDSSIHNTLKGVAQILVEYPDTSLVIDGFTDSTGNDASNQILSERRAESVRSFLI
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
SQNVAAGRAVARGNGERYPLCTNSTAEGRACNRRVEIQILPLK
HCCCHHCHHEECCCCCCCCEECCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]