Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
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Accession | NC_005085 |
Length | 4,751,080 |
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The map label for this gene is yjgA [C]
Identifier: 34498653
GI number: 34498653
Start: 3482365
End: 3482907
Strand: Direct
Name: yjgA [C]
Synonym: CV_3198
Alternate gene names: 34498653
Gene position: 3482365-3482907 (Clockwise)
Preceding gene: 34498647
Following gene: 34498654
Centisome position: 73.3
GC content: 61.69
Gene sequence:
>543_bases ATGACCGATTACCAGAACGACGACGACGGCTTCGTCAGCAAGTCCCAGCGCAAGCGCGACATGGACGCGCTGCAGGATCT GGGCCGCGAACTGGTCGACCTGTCCAAGGACACGCTGAAGAAGATGCAGCTGCCGGAAGATCTGCTCACCGCCGTACTGG ACTATAAACGTTTCACCGCCAACGGCGCGCTGCGCCGCCAGATGCAGTACATCGGCAAGCTGATGCGCGACGTCGATCCG GAACCGATCCGCGAATACCTGAAAGTGCTGAAGGGCGAGTCGTCCGAACACATCGCCTGGCAACACCTGCTGGAACGCTG GCGCGAAAAGCTGATGGCCGACGACAAGGCGCTGTCCGACTTCCTGGCCGCCTTCCCGGAAGGCGATCCGCAGCAGCTGC GCACGCTGATGCGCAACGCCCGCAAGGAGCTGCAGGACAACAAACCGCCCAAGGCCTACCGCCAATTGTTCCAGGAAATC AAGGCGCTGATCCCGGAGCCGGGCAAGCCGCGGCTGTGGCAAAAGGACGAGGACGAAGAATAA
Upstream 100 bases:
>100_bases AATGTCTTATCTGCCATAGTATCTTTCGGAACAGTGGAAACGGCCGACGGCCTTTTCCGGTATCATACCAGCCTTGAAAA CCGAGTGAGACCTAGCAACG
Downstream 100 bases:
>100_bases TGCTGAAGATAGGCCTGGTTTCCATTTCCGACCGCGCCAGCCAAGGCGTGTACGAGGACAAGGGCCTGCCCGCGCTGCGG GAATGGCTGGCGCGCGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MTDYQNDDDGFVSKSQRKRDMDALQDLGRELVDLSKDTLKKMQLPEDLLTAVLDYKRFTANGALRRQMQYIGKLMRDVDP EPIREYLKVLKGESSEHIAWQHLLERWREKLMADDKALSDFLAAFPEGDPQQLRTLMRNARKELQDNKPPKAYRQLFQEI KALIPEPGKPRLWQKDEDEE
Sequences:
>Translated_180_residues MTDYQNDDDGFVSKSQRKRDMDALQDLGRELVDLSKDTLKKMQLPEDLLTAVLDYKRFTANGALRRQMQYIGKLMRDVDP EPIREYLKVLKGESSEHIAWQHLLERWREKLMADDKALSDFLAAFPEGDPQQLRTLMRNARKELQDNKPPKAYRQLFQEI KALIPEPGKPRLWQKDEDEE >Mature_179_residues TDYQNDDDGFVSKSQRKRDMDALQDLGRELVDLSKDTLKKMQLPEDLLTAVLDYKRFTANGALRRQMQYIGKLMRDVDPE PIREYLKVLKGESSEHIAWQHLLERWREKLMADDKALSDFLAAFPEGDPQQLRTLMRNARKELQDNKPPKAYRQLFQEIK ALIPEPGKPRLWQKDEDEE
Specific function: Unknown
COG id: COG3028
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0307 family
Homologues:
Organism=Escherichia coli, GI1790681, Length=159, Percent_Identity=44.6540880503145, Blast_Score=121, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3198_CHRVO (Q7NT63)
Other databases:
- EMBL: AE016825 - RefSeq: NP_902868.1 - ProteinModelPortal: Q7NT63 - SMR: Q7NT63 - GeneID: 2547061 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_3198 - NMPDR: fig|243365.1.peg.3198 - HOGENOM: HBG677712 - OMA: KAPWEEE - PhylomeDB: Q7NT63 - ProtClustDB: PRK05255 - BioCyc: CVIO243365:CV_3198-MONOMER - HAMAP: MF_00765 - InterPro: IPR023153 - InterPro: IPR006839 - PIRSF: PIRSF016183
Pfam domain/function: PF04751 DUF615
EC number: NA
Molecular weight: Translated: 21232; Mature: 21101
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYQNDDDGFVSKSQRKRDMDALQDLGRELVDLSKDTLKKMQLPEDLLTAVLDYKRFTA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH NGALRRQMQYIGKLMRDVDPEPIREYLKVLKGESSEHIAWQHLLERWREKLMADDKALSD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH FLAAFPEGDPQQLRTLMRNARKELQDNKPPKAYRQLFQEIKALIPEPGKPRLWQKDEDEE HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDYQNDDDGFVSKSQRKRDMDALQDLGRELVDLSKDTLKKMQLPEDLLTAVLDYKRFTA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH NGALRRQMQYIGKLMRDVDPEPIREYLKVLKGESSEHIAWQHLLERWREKLMADDKALSD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH FLAAFPEGDPQQLRTLMRNARKELQDNKPPKAYRQLFQEIKALIPEPGKPRLWQKDEDEE HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 14500782