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The map label for this gene is cph2 [H]

Identifier: 34498647

GI number: 34498647

Start: 3475639

End: 3477315

Strand: Direct

Name: cph2 [H]

Synonym: CV_3192

Alternate gene names: 34498647

Gene position: 3475639-3477315 (Clockwise)

Preceding gene: 34498646

Following gene: 34498653

Centisome position: 73.15

GC content: 67.56

Gene sequence:

>1677_bases
ATGCGTTCCATCCAGATATCCCGCTACAGCAGGGGCATTCCCCTGCTGCTCGCTCTCCTTGGCCTGCTGCTCATCGCCAG
CCAGCTGATGGGGCGACTGGATTTCTGGCTGTACGACAGTCTGACCCGGGCCAACCCGCTGCACAAGCCGGACCAGAACC
TCATCGTCATCGCCATAGATGAAAAAAGCCTGGCTGAGCTGGGCCGATGGCCATGGCCGCGCGCCTATCACGCCCAACTG
CTCGACAAGCTGGGCGGCGCCAGCTCGATCGGCTTCGACATCGCCATCGCCGAGCCCTCGCGCGACCATCCCGAGGCGGA
CAAGCATCTTGCCGAGGCCATCCGCCGCAACGGCAAGGTGGTCGGCCCGGTCTTTCCCGAACTGCAGGGCGGCCAATTGC
TGGAAACCCGCCCCCTGCCGCCGATCGCCTCCGCGATGGCCGCCCTCGGCCACACCGACTATGAGCGCGACGACGACGGC
ACCATACGCCGCGTCTACCTGAAAGCCGGGCTGGGCGCGCCGCGCTATCCCAGCTTCGCCGCCGCCGTCTGCGCCGTCTC
AGACGGCAGGAAGGAAACCATCCCCGCGCCCCAACGCCCTCGCCCGGGCCAGGCCTGGCAGCGCCGCGACCTGGTGATGG
TGCCGTTCAGCAGCGGCCCCAAGCCCTTTCACACGGTGTCGTACAGCGACGCGCTGAACCGGCTGCCGGCCTCGTTCTTC
GAAGACAGCATCGTGCTGATAGGCGTGACCGCCAACGGCCTGGGCAATCAGCAGCCGACCCCGGTCTCGGCCAACAATAC
CGGCATGTCGGGCGTGGAAATCGACGCCTACATGGTCCACGGCCTGCTCACCCACCAGCAGATACGCCCGATGCCGCTGC
TGCTGGAGTGCCTGCTGGGGGCCCTGCTGCTGGGACTGGGAGACTGGCTGCTGTCGCGCCGGGTGCGCGCGCGCAGCCTG
CTGGCAGGCTACGCGCTGGCGTCGGCGGTGGTGCTGCTGTCTTCGGCCGCCCTGCTCTACTTCGCCTCGCTGTGGGCCGG
CGGCAGCGTGGTGGCCATCCTGCTGCTGCTCAGCGGCACGATGCGCTACGTCAGCGGCCAGGCCCAGCTGTTCTCGCTGG
CTTTCACCGATGGCTTGACCCGGCTCTACAACCGCCGCCATTTCGACGAGGCGTTCGGCCACGCGGTGGAACAATGCCGG
CAGAAACGCAAGCCGCTGGCGCTGCTGATCCTGGACATAGACCACTTCAAGAAATACAACGACCATTACGGCCACTACGC
CGGCGACGAAGCGCTGCAGAAAGTGGCCCGCGCGCTCAAGGACTGCTTTCGCCAGAAAGGCCAGCTGACCGCCCGGCTGG
GCGGGGAGGAGTTCGGCGTGCTGCTGACGCCGGGGGACACGCCGCAGGCGCTGTCCGCCGCGGAGCGCTTTCTCGGCCGC
CTGGCGGCGATGGAGCTGCCCCATTCCGCCAGCCCGCTCGGCAAGATCAGCTGTAGCATAGGCGTATGCGCCTGCATCCC
CGGACCGGCGGACAGCACGCGCACCCTGTTCGAGCAGGCAGATCAGGCGCTGTACGAAGCCAAGCGCGGCGGCCGCAACC
GCGCCAGCCTTTACCAAGGCCCACCCGGGAACGGCGCAAAAAAAAGCGCGGACATAACGTCCGCGCGGCAGGATTGA

Upstream 100 bases:

>100_bases
GCCCAGCGGGCGCTTCGCCGCCACCATCCTGGTGGACGGCGATGGCGGATATCATGCCGAAGAGCGATATCCGGCGCTGC
TTTTGCCGTAAAATCACACC

Downstream 100 bases:

>100_bases
ACATCCGGGAAACGGTTCAGCCGCGGCGGCGGCGCCCAACCAGCCACAAGGTCCAGACGATCACGCCGGCAAAGAACACC
GCCACCCAGAACGGCATGGT

Product: two component sensor

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MRSIQISRYSRGIPLLLALLGLLLIASQLMGRLDFWLYDSLTRANPLHKPDQNLIVIAIDEKSLAELGRWPWPRAYHAQL
LDKLGGASSIGFDIAIAEPSRDHPEADKHLAEAIRRNGKVVGPVFPELQGGQLLETRPLPPIASAMAALGHTDYERDDDG
TIRRVYLKAGLGAPRYPSFAAAVCAVSDGRKETIPAPQRPRPGQAWQRRDLVMVPFSSGPKPFHTVSYSDALNRLPASFF
EDSIVLIGVTANGLGNQQPTPVSANNTGMSGVEIDAYMVHGLLTHQQIRPMPLLLECLLGALLLGLGDWLLSRRVRARSL
LAGYALASAVVLLSSAALLYFASLWAGGSVVAILLLLSGTMRYVSGQAQLFSLAFTDGLTRLYNRRHFDEAFGHAVEQCR
QKRKPLALLILDIDHFKKYNDHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFGVLLTPGDTPQALSAAERFLGR
LAAMELPHSASPLGKISCSIGVCACIPGPADSTRTLFEQADQALYEAKRGGRNRASLYQGPPGNGAKKSADITSARQD

Sequences:

>Translated_558_residues
MRSIQISRYSRGIPLLLALLGLLLIASQLMGRLDFWLYDSLTRANPLHKPDQNLIVIAIDEKSLAELGRWPWPRAYHAQL
LDKLGGASSIGFDIAIAEPSRDHPEADKHLAEAIRRNGKVVGPVFPELQGGQLLETRPLPPIASAMAALGHTDYERDDDG
TIRRVYLKAGLGAPRYPSFAAAVCAVSDGRKETIPAPQRPRPGQAWQRRDLVMVPFSSGPKPFHTVSYSDALNRLPASFF
EDSIVLIGVTANGLGNQQPTPVSANNTGMSGVEIDAYMVHGLLTHQQIRPMPLLLECLLGALLLGLGDWLLSRRVRARSL
LAGYALASAVVLLSSAALLYFASLWAGGSVVAILLLLSGTMRYVSGQAQLFSLAFTDGLTRLYNRRHFDEAFGHAVEQCR
QKRKPLALLILDIDHFKKYNDHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFGVLLTPGDTPQALSAAERFLGR
LAAMELPHSASPLGKISCSIGVCACIPGPADSTRTLFEQADQALYEAKRGGRNRASLYQGPPGNGAKKSADITSARQD
>Mature_558_residues
MRSIQISRYSRGIPLLLALLGLLLIASQLMGRLDFWLYDSLTRANPLHKPDQNLIVIAIDEKSLAELGRWPWPRAYHAQL
LDKLGGASSIGFDIAIAEPSRDHPEADKHLAEAIRRNGKVVGPVFPELQGGQLLETRPLPPIASAMAALGHTDYERDDDG
TIRRVYLKAGLGAPRYPSFAAAVCAVSDGRKETIPAPQRPRPGQAWQRRDLVMVPFSSGPKPFHTVSYSDALNRLPASFF
EDSIVLIGVTANGLGNQQPTPVSANNTGMSGVEIDAYMVHGLLTHQQIRPMPLLLECLLGALLLGLGDWLLSRRVRARSL
LAGYALASAVVLLSSAALLYFASLWAGGSVVAILLLLSGTMRYVSGQAQLFSLAFTDGLTRLYNRRHFDEAFGHAVEQCR
QKRKPLALLILDIDHFKKYNDHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFGVLLTPGDTPQALSAAERFLGR
LAAMELPHSASPLGKISCSIGVCACIPGPADSTRTLFEQADQALYEAKRGGRNRASLYQGPPGNGAKKSADITSARQD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4252

COG function: function code T; Predicted transmembrane sensor domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=225, Percent_Identity=32.8888888888889, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=38.7878787878788, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787262, Length=229, Percent_Identity=34.061135371179, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=34.8484848484849, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=42.1052631578947, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787541, Length=196, Percent_Identity=34.1836734693878, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=34.3558282208589, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=29.6875, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787816, Length=182, Percent_Identity=33.5164835164835, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788085, Length=207, Percent_Identity=29.951690821256, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=33.9285714285714, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=208, Percent_Identity=27.4038461538462, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=29.6969696969697, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=32.183908045977, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 60620; Mature: 60620

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIQISRYSRGIPLLLALLGLLLIASQLMGRLDFWLYDSLTRANPLHKPDQNLIVIAID
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
EKSLAELGRWPWPRAYHAQLLDKLGGASSIGFDIAIAEPSRDHPEADKHLAEAIRRNGKV
CHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCE
VGPVFPELQGGQLLETRPLPPIASAMAALGHTDYERDDDGTIRRVYLKAGLGAPRYPSFA
EECCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHH
AAVCAVSDGRKETIPAPQRPRPGQAWQRRDLVMVPFSSGPKPFHTVSYSDALNRLPASFF
HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCEEECHHHHHHHCCHHHH
EDSIVLIGVTANGLGNQQPTPVSANNTGMSGVEIDAYMVHGLLTHQQIRPMPLLLECLLG
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHH
ALLLGLGDWLLSRRVRARSLLAGYALASAVVLLSSAALLYFASLWAGGSVVAILLLLSGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MRYVSGQAQLFSLAFTDGLTRLYNRRHFDEAFGHAVEQCRQKRKPLALLILDIDHFKKYN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHC
DHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFGVLLTPGDTPQALSAAERFLGR
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHH
LAAMELPHSASPLGKISCSIGVCACIPGPADSTRTLFEQADQALYEAKRGGRNRASLYQG
HHHHCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPGNGAKKSADITSARQD
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSIQISRYSRGIPLLLALLGLLLIASQLMGRLDFWLYDSLTRANPLHKPDQNLIVIAID
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
EKSLAELGRWPWPRAYHAQLLDKLGGASSIGFDIAIAEPSRDHPEADKHLAEAIRRNGKV
CHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCE
VGPVFPELQGGQLLETRPLPPIASAMAALGHTDYERDDDGTIRRVYLKAGLGAPRYPSFA
EECCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHH
AAVCAVSDGRKETIPAPQRPRPGQAWQRRDLVMVPFSSGPKPFHTVSYSDALNRLPASFF
HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCEEECHHHHHHHCCHHHH
EDSIVLIGVTANGLGNQQPTPVSANNTGMSGVEIDAYMVHGLLTHQQIRPMPLLLECLLG
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHH
ALLLGLGDWLLSRRVRARSLLAGYALASAVVLLSSAALLYFASLWAGGSVVAILLLLSGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MRYVSGQAQLFSLAFTDGLTRLYNRRHFDEAFGHAVEQCRQKRKPLALLILDIDHFKKYN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHC
DHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFGVLLTPGDTPQALSAAERFLGR
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHH
LAAMELPHSASPLGKISCSIGVCACIPGPADSTRTLFEQADQALYEAKRGGRNRASLYQG
HHHHCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPGNGAKKSADITSARQD
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]