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The map label for this gene is ycgM [C]

Identifier: 34498243

GI number: 34498243

Start: 3021901

End: 3022551

Strand: Reverse

Name: ycgM [C]

Synonym: CV_2788

Alternate gene names: 34498243

Gene position: 3022551-3021901 (Counterclockwise)

Preceding gene: 34498246

Following gene: 34498242

Centisome position: 63.62

GC content: 65.59

Gene sequence:

>651_bases
ATGTCGAGTGTAAAACTTGGCTTACATGCCATCCGCGTCGGCAATATTTTCTGCATAGGCCGCAATTACGCGGCGCATGC
CGCCGAGCTGGGCAACAAGGTGGAGGACGAGCCGCTGGTATTCCTGAAGCCCACCTCGGCGTTGCTGGACGAGTCCTCGC
CGATACGGCTTCCGGAATATTCCGGCGACGTGCACCACGAGTGCGAGCTGGTGGCGCTGATAGGCAAGGGCGGCGACGAC
ATTCCGCCGGAGAAGGCGCTGGATCATGTGGCCGGTTATGGAATAGGGCTGGATCTGACCGCGCGCGACGCGCAGGCGGA
GGCCAAGCGCAAAGGCCAGCCGTGGACCAAGGCCAAGGGCTTCCGCGGCGCGGCCTGCGTGTCGACGCTGGTGCCGGCGG
CCAGGGTGGAGGATCCGCAGCGGCTGAAGTTCGAGCTGCGCGTCAACGGCCAGCTGCGCCAGCGCGGCGACGCCGGCCTG
ATGCTGTTCACGCTGGCCGAGCAGATCAGCTACCTGTCCAGGCTGTACGGCCTGTCCGACGGCGATCTGATCTTCACCGG
CACGCCCGAAGGCGTGGCGCGCATCGAATCCGGCGACCAGCTGGACCTCAGCCTGCACGGGCAAGTGTCGGCGCATTGGA
AGGTGGCATGA

Upstream 100 bases:

>100_bases
TGCTGCAACGCACAAACTGTAATAGGGCGCGCGCGGCTTGCCGGTATGGATTCGGCATCGCTTGTGGGATAATCGACTCC
GGAATTCAGGGAGAATTGCA

Downstream 100 bases:

>100_bases
TGGCAAGGCAGGAAGAGCGGGACGACGACAAGGTGCGTCTGGACAAGTGGCTGTGGGCGGCGCGCTTCTTCAAGACGCGC
CAGCTGGCGCACGAGGCGCT

Product: isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSSVKLGLHAIRVGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLDESSPIRLPEYSGDVHHECELVALIGKGGDD
IPPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKGFRGAACVSTLVPAARVEDPQRLKFELRVNGQLRQRGDAGL
MLFTLAEQISYLSRLYGLSDGDLIFTGTPEGVARIESGDQLDLSLHGQVSAHWKVA

Sequences:

>Translated_216_residues
MSSVKLGLHAIRVGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLDESSPIRLPEYSGDVHHECELVALIGKGGDD
IPPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKGFRGAACVSTLVPAARVEDPQRLKFELRVNGQLRQRGDAGL
MLFTLAEQISYLSRLYGLSDGDLIFTGTPEGVARIESGDQLDLSLHGQVSAHWKVA
>Mature_215_residues
SSVKLGLHAIRVGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLDESSPIRLPEYSGDVHHECELVALIGKGGDDI
PPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKGFRGAACVSTLVPAARVEDPQRLKFELRVNGQLRQRGDAGLM
LFTLAEQISYLSRLYGLSDGDLIFTGTPEGVARIESGDQLDLSLHGQVSAHWKVA

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI13654274, Length=201, Percent_Identity=46.2686567164179, Blast_Score=205, Evalue=2e-53,
Organism=Homo sapiens, GI215422413, Length=193, Percent_Identity=46.1139896373057, Blast_Score=200, Evalue=9e-52,
Organism=Homo sapiens, GI66348062, Length=193, Percent_Identity=46.1139896373057, Blast_Score=200, Evalue=1e-51,
Organism=Homo sapiens, GI156231349, Length=192, Percent_Identity=35.4166666666667, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI40786394, Length=178, Percent_Identity=35.3932584269663, Blast_Score=112, Evalue=2e-25,
Organism=Escherichia coli, GI1787428, Length=197, Percent_Identity=42.1319796954315, Blast_Score=175, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17557057, Length=200, Percent_Identity=35.5, Blast_Score=160, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6324161, Length=225, Percent_Identity=37.3333333333333, Blast_Score=140, Evalue=1e-34,
Organism=Drosophila melanogaster, GI28571789, Length=181, Percent_Identity=40.8839779005525, Blast_Score=140, Evalue=7e-34,
Organism=Drosophila melanogaster, GI28572127, Length=185, Percent_Identity=36.7567567567568, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24663695, Length=174, Percent_Identity=28.1609195402299, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 23295; Mature: 23164

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVKLGLHAIRVGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLDESSPIRLPEY
CCCCEEEEEEEEECCEEEEECCCHHHHHHHCCCCCCCCEEEECCCHHHHCCCCCCCCCCC
SGDVHHECELVALIGKGGDDIPPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKG
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCCCC
FRGAACVSTLVPAARVEDPQRLKFELRVNGQLRQRGDAGLMLFTLAEQISYLSRLYGLSD
CCCHHHHHHHCCHHHCCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
GDLIFTGTPEGVARIESGDQLDLSLHGQVSAHWKVA
CCEEEECCCCHHEEECCCCEEEEEECCCEEEEEEEC
>Mature Secondary Structure 
SSVKLGLHAIRVGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLDESSPIRLPEY
CCCEEEEEEEEECCEEEEECCCHHHHHHHCCCCCCCCEEEECCCHHHHCCCCCCCCCCC
SGDVHHECELVALIGKGGDDIPPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKG
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCCCC
FRGAACVSTLVPAARVEDPQRLKFELRVNGQLRQRGDAGLMLFTLAEQISYLSRLYGLSD
CCCHHHHHHHCCHHHCCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
GDLIFTGTPEGVARIESGDQLDLSLHGQVSAHWKVA
CCEEEECCCCHHEEECCCCEEEEEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]