Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
---|---|
Accession | NC_005085 |
Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498148
Identifier: 34498148
GI number: 34498148
Start: 2916581
End: 2917141
Strand: Reverse
Name: 34498148
Synonym: CV_2693
Alternate gene names: NA
Gene position: 2917141-2916581 (Counterclockwise)
Preceding gene: 34498149
Following gene: 34498144
Centisome position: 61.4
GC content: 60.43
Gene sequence:
>561_bases ATGGCAAGCTGCGGGTTTGCCAAAATTCTGGAGAAATCCGTGACAAAAGAACAATTGACTATCCATCTGCGCATCCAGTA CTTGTGCAAGGCCGTGTTGGCCTTGTCCATCGGCGCGTTCGGCTTGCTGGTGGCGAGCGGAAATATCATCGATTACGACT CCAACTGGCAATTCGTCCGCCACGTGCTGTCGATGGATGCCTTGGAGCCTTGGTTCAATGGCGCGGCCTTGGAGGGCAGG GCAGTGCGCGATCCGTTCGGGCAGCAACTGGCTTATTTCGCCATCATTGTCGGCGAAATGGCTTGCGGGCTGTTATGCAT GGCGGGCGGGGTCGGCATGCTGAGGGCGGCGGCCGGCCGCGACGGCCTGGCCTGGGGCAAGAGCCTGTTCACACTGGGCG CGCTGGTCGCCGTGCTGGTCTGGTATTTCGGCTTCGCGGTGGTGGGCGGCGAGTATTTCGCGATGTGGGCCAGCAAGTGG AATGGCCAGATGAAGGCATACGCCTTCGTCGGCTTCATCCTGCTCAGCCTGGTTTACATCCGTCAGCGGGAGGAGGCCTG A
Upstream 100 bases:
>100_bases GGTGCTGAAGGCGATTCCGGCGCGTTGAGCGGTTTCACCCGAAGATGAAGAACGGTCTGGCTTTGCCAGGCCGTTTTTTT ATTTCGGCCGCGGGCTGATC
Downstream 100 bases:
>100_bases TCGCCGGCGTTCCGCGGCCCCTGGCCGGAAAAGTGGCGGCCGAAGCCTATGATCACCAGCGCGCTGGTGAAGATGATCTG CAGGTCGGCCAGCAGCCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MASCGFAKILEKSVTKEQLTIHLRIQYLCKAVLALSIGAFGLLVASGNIIDYDSNWQFVRHVLSMDALEPWFNGAALEGR AVRDPFGQQLAYFAIIVGEMACGLLCMAGGVGMLRAAAGRDGLAWGKSLFTLGALVAVLVWYFGFAVVGGEYFAMWASKW NGQMKAYAFVGFILLSLVYIRQREEA
Sequences:
>Translated_186_residues MASCGFAKILEKSVTKEQLTIHLRIQYLCKAVLALSIGAFGLLVASGNIIDYDSNWQFVRHVLSMDALEPWFNGAALEGR AVRDPFGQQLAYFAIIVGEMACGLLCMAGGVGMLRAAAGRDGLAWGKSLFTLGALVAVLVWYFGFAVVGGEYFAMWASKW NGQMKAYAFVGFILLSLVYIRQREEA >Mature_185_residues ASCGFAKILEKSVTKEQLTIHLRIQYLCKAVLALSIGAFGLLVASGNIIDYDSNWQFVRHVLSMDALEPWFNGAALEGRA VRDPFGQQLAYFAIIVGEMACGLLCMAGGVGMLRAAAGRDGLAWGKSLFTLGALVAVLVWYFGFAVVGGEYFAMWASKWN GQMKAYAFVGFILLSLVYIRQREEA
Specific function: Unknown
COG id: COG5472
COG function: function code S; Predicted small integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20306; Mature: 20175
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASCGFAKILEKSVTKEQLTIHLRIQYLCKAVLALSIGAFGLLVASGNIIDYDSNWQFVR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH HVLSMDALEPWFNGAALEGRAVRDPFGQQLAYFAIIVGEMACGLLCMAGGVGMLRAAAGR HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC DGLAWGKSLFTLGALVAVLVWYFGFAVVGGEYFAMWASKWNGQMKAYAFVGFILLSLVYI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RQREEA HHHCCC >Mature Secondary Structure ASCGFAKILEKSVTKEQLTIHLRIQYLCKAVLALSIGAFGLLVASGNIIDYDSNWQFVR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH HVLSMDALEPWFNGAALEGRAVRDPFGQQLAYFAIIVGEMACGLLCMAGGVGMLRAAAGR HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC DGLAWGKSLFTLGALVAVLVWYFGFAVVGGEYFAMWASKWNGQMKAYAFVGFILLSLVYI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RQREEA HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA