BacMap

Definition	Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession	NC_005085
Length	4,751,080

Click here to switch to the map view.

The map label for this gene is ybbO [H]

Identifier: 34498144

GI number: 34498144

Start: 2911985

End: 2912821

Strand: Reverse

Name: ybbO [H]

Synonym: CV_2689

Alternate gene names: 34498144

Gene position: 2912821-2911985 (Counterclockwise)

Preceding gene: 34498148

Following gene: 34498143

Centisome position: 61.31

GC content: 66.67

Gene sequence:

>837_bases
ATGACCGAAACCGTCCGCACCATCCTGATCACCGGCTGCTCCAGCGGCATCGGCTATCACACGGCCAAGTGGTTCCGCGA
GAAAGGTTGGAGGGTGTTCGCCAGCTGCCGCAGGCAGGAGGACGTCGAGCGGCTGCTGGCGGAAGGCTTCGAGAGCCTGC
GGCTGGACGTGGACGACGCCGCTTCGATCCGCGCGGCGCTGGACGAGGTGCTGGCCCGGACCGGCGGCCGGCTCGACGCG
CTGTTCAACAATGCCGGCTTCGGCCAGCCCGGCGCGGTGGAAGACATCTCGCGCCAGGCGATGCGCGAGCAGTTCGAGAC
GAATCTGTTCGGTCCGTGGGAGCTGAGCAATGCCGTGATGAAAACGATGCGCGCGCAAGGCCATGGCCGCATCGTCTACA
ACAGCTCCATCCTCGGCTTCGCCGCGATGCGCTGGCGCGGCGCCTACAACGCCAGCAAGTTCGCGATGGAAGGCCTGTGC
GACACGCTGCGCCAGGAGCTGCACGGCACCGACATCCACGTGTCGCTGGTGGAGCCGGGCCCGATAGAGAGCCGCTTCCG
CCCCAATGCGCTGGCGAAGTTTTTGAAGAACGTCGACATCGACGGCAGCGTGCATCGCGACAATTACCAGCAGCAGCTGG
AAAGGCTGAAGAAAGAGGGCCACGCCGCGCCGTTCACGCTGCCGGCTACGGCGGTTGCGGAGGCGGTGTGGCGAGCCGTC
ACCAGCCGCCGGCCGCGCGCCCGCTACCGCGTGACCTTTCCCACCAAACTGTTCTGGTTCCTGCGTCGTTTCCTGCCGCA
GCGCTGGTACGACGGTACCTGCCGGAGTGTGGCGTGA

Upstream 100 bases:

>100_bases
AAACGACAGCCTTCCGGTCCTCCTATCTTCATATCGGGCGGTTCCGGCGCGGCGACGAATGGTGTAGGGTGGCGACTCCC
TATCTTCCCCGAGGCCCGAC

Downstream 100 bases:

>100_bases
GGCGTCTAAGGCCTTAATTGAATTTTCCTGATGCCATCTTGATATTTTTTTGTTGACCCGCGTAGCGAATTGGCTTTACA
TTCATTCGCGCTTGTCATGG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTETVRTILITGCSSGIGYHTAKWFREKGWRVFASCRRQEDVERLLAEGFESLRLDVDDAASIRAALDEVLARTGGRLDA
LFNNAGFGQPGAVEDISRQAMREQFETNLFGPWELSNAVMKTMRAQGHGRIVYNSSILGFAAMRWRGAYNASKFAMEGLC
DTLRQELHGTDIHVSLVEPGPIESRFRPNALAKFLKNVDIDGSVHRDNYQQQLERLKKEGHAAPFTLPATAVAEAVWRAV
TSRRPRARYRVTFPTKLFWFLRRFLPQRWYDGTCRSVA

Sequences:

>Translated_278_residues
MTETVRTILITGCSSGIGYHTAKWFREKGWRVFASCRRQEDVERLLAEGFESLRLDVDDAASIRAALDEVLARTGGRLDA
LFNNAGFGQPGAVEDISRQAMREQFETNLFGPWELSNAVMKTMRAQGHGRIVYNSSILGFAAMRWRGAYNASKFAMEGLC
DTLRQELHGTDIHVSLVEPGPIESRFRPNALAKFLKNVDIDGSVHRDNYQQQLERLKKEGHAAPFTLPATAVAEAVWRAV
TSRRPRARYRVTFPTKLFWFLRRFLPQRWYDGTCRSVA
>Mature_277_residues
TETVRTILITGCSSGIGYHTAKWFREKGWRVFASCRRQEDVERLLAEGFESLRLDVDDAASIRAALDEVLARTGGRLDAL
FNNAGFGQPGAVEDISRQAMREQFETNLFGPWELSNAVMKTMRAQGHGRIVYNSSILGFAAMRWRGAYNASKFAMEGLCD
TLRQELHGTDIHVSLVEPGPIESRFRPNALAKFLKNVDIDGSVHRDNYQQQLERLKKEGHAAPFTLPATAVAEAVWRAVT
SRRPRARYRVTFPTKLFWFLRRFLPQRWYDGTCRSVA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI223718074, Length=280, Percent_Identity=33.2142857142857, Blast_Score=121, Evalue=9e-28,
Organism=Homo sapiens, GI7657478, Length=264, Percent_Identity=33.7121212121212, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI40548397, Length=283, Percent_Identity=30.3886925795053, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI214010158, Length=283, Percent_Identity=30.3886925795053, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI214010156, Length=283, Percent_Identity=30.3886925795053, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI22758144, Length=283, Percent_Identity=30.3886925795053, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=32.994923857868, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI44680136, Length=276, Percent_Identity=27.536231884058, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI44680133, Length=276, Percent_Identity=27.536231884058, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI17738292, Length=276, Percent_Identity=27.536231884058, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19743808, Length=277, Percent_Identity=30.3249097472924, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI150247226, Length=278, Percent_Identity=27.3381294964029, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=34.5, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI22507405, Length=276, Percent_Identity=31.1594202898551, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI50726952, Length=289, Percent_Identity=28.0276816608997, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI119392083, Length=275, Percent_Identity=28.3636363636364, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI157739938, Length=190, Percent_Identity=30, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=29.1005291005291, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4504503, Length=182, Percent_Identity=29.1208791208791, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=30.8510638297872, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=188, Percent_Identity=30.8510638297872, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=177, Percent_Identity=31.0734463276836, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI40254992, Length=190, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=25.6410256410256, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1786701, Length=266, Percent_Identity=41.3533834586466, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1787335, Length=179, Percent_Identity=31.2849162011173, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=32.0652173913043, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082100, Length=183, Percent_Identity=32.7868852459016, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=30.4812834224599, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082160, Length=181, Percent_Identity=27.6243093922652, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367365, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=287, Percent_Identity=27.8745644599303, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17507613, Length=287, Percent_Identity=27.8745644599303, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115534660, Length=288, Percent_Identity=28.125, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71997402, Length=212, Percent_Identity=30.6603773584906, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17570069, Length=202, Percent_Identity=30.6930693069307, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193210355, Length=283, Percent_Identity=27.208480565371, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=27.979274611399, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17557780, Length=263, Percent_Identity=25.8555133079848, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=215, Percent_Identity=32.093023255814, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=180, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=35.2040816326531, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24641232, Length=223, Percent_Identity=29.5964125560538, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=32.1608040201005, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=28.1914893617021, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=27.9187817258883, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24651139, Length=306, Percent_Identity=28.7581699346405, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571387, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=28.0193236714976, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28571526, Length=214, Percent_Identity=27.5700934579439, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45553409, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24647948, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357041, Length=214, Percent_Identity=26.6355140186916, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24647946, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24663911, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007234, Length=218, Percent_Identity=26.605504587156, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31560; Mature: 31429

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETVRTILITGCSSGIGYHTAKWFREKGWRVFASCRRQEDVERLLAEGFESLRLDVDDA
CCCHHHHHEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ASIRAALDEVLARTGGRLDALFNNAGFGQPGAVEDISRQAMREQFETNLFGPWELSNAVM
HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KTMRAQGHGRIVYNSSILGFAAMRWRGAYNASKFAMEGLCDTLRQELHGTDIHVSLVEPG
HHHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
PIESRFRPNALAKFLKNVDIDGSVHRDNYQQQLERLKKEGHAAPFTLPATAVAEAVWRAV
CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
TSRRPRARYRVTFPTKLFWFLRRFLPQRWYDGTCRSVA
HCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TETVRTILITGCSSGIGYHTAKWFREKGWRVFASCRRQEDVERLLAEGFESLRLDVDDA
CCHHHHHEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ASIRAALDEVLARTGGRLDALFNNAGFGQPGAVEDISRQAMREQFETNLFGPWELSNAVM
HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KTMRAQGHGRIVYNSSILGFAAMRWRGAYNASKFAMEGLCDTLRQELHGTDIHVSLVEPG
HHHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
PIESRFRPNALAKFLKNVDIDGSVHRDNYQQQLERLKKEGHAAPFTLPATAVAEAVWRAV
CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
TSRRPRARYRVTFPTKLFWFLRRFLPQRWYDGTCRSVA
HCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]