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The map label for this gene is spaO [H]

Identifier: 34498080

GI number: 34498080

Start: 2832178

End: 2833068

Strand: Reverse

Name: spaO [H]

Synonym: CV_2625

Alternate gene names: 34498080

Gene position: 2833068-2832178 (Counterclockwise)

Preceding gene: 34498081

Following gene: 34498079

Centisome position: 59.63

GC content: 71.6

Gene sequence:

>891_bases
TTGAGGCTGGCATTGAGGCAGGTGGATGGCGCGGCGCTGGCGCTGCGGCGCTGCGGCGAGGCATGGGCCGGGCAGGACGT
GCGCATCGCTTATCCGCCGTCCCACGGTTGCTGGCTGAAGGTGGCCGGCGCGGACGGGAGCTGGCAGGGCTGGCTGCAGC
CCAGGGCCTGGCTGCGGCACATGGCGCCCGAACTGGCCAGCCTGGCCAGCGCCGCGGGCATGGACGACCGCCTGTCCGAG
TTGATCGCCGCCTGCGAGGCGCCGCTGTCGTGGCCGGTGGCGGACATGCCGCTGGGACGAATCGTCGCGGGCGAGCGCCG
GGAAGGCTCCCAGTTGCCGCAGCGGCCGATGCTGCGCATGGACACCCCGCAGGGCGAGGTGTGGCTGGAAAAAGCGCCGG
CGCCCGCCGAGGCCGCGCGCGACCGGGTGCCGGGCTGGCTGCCGATGCCGCTGCGCTTTTTGCTGGGCGACAGCATGGTC
AGCCCGTCGCTGCTGCGGCGGGCGAAGGCCGGCGACGTATTGCTGATTTCCAGGCCGGCGCAGACGGTGAGCTGCAACGG
ACGGGCGATCGGAACTTATCAATGGACGGAAGAGGGAATCATCATGGAATGGCAGAACGAAATGGCGGCAGCGGCCGAGA
CGCGGCCGCTGGCCGACCTGGACCGGCTGCCGGTGCGGCTGGAATTCGTGCTGCAGCAGAGCGAGGTGACGCTGGACGAG
CTGCGCGAGCTCTGCCGCAGCAATGTCCTGCCGCTGAGCGCGGACGCGGAGCGCCGAGTGGAGCTGCGCGCCAACGGCGC
GCTGCTGGGCCGAGGCGAGCTGGTGCAGCTGGACGGGCGGCTGGGCGTGGAAGTGGCGCAATGGCTGGGCGGGTCGGGCG
ATGTCGAATGA

Upstream 100 bases:

>100_bases
AGCAGTGGCAAAGCGGCAATCCGCAGCAATGGACGCTGCGCGATGACGGCGGACAGGGCAGCGGCGGCCGGCAGCCGCAG
CGTGACGAGGAGGAAGAGGG

Downstream 100 bases:

>100_bases
TATCTCGCTGATCGCGCTGCTGGCGTTTTCCACGCTGCTGCCTTTCCTGATCGCGTCCGGAACCTGTTTCGTCAAGTTCT
CCATCGTGTTCGTCATGGTG

Product: surface presentation of antigens protein SpaO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRLALRQVDGAALALRRCGEAWAGQDVRIAYPPSHGCWLKVAGADGSWQGWLQPRAWLRHMAPELASLASAAGMDDRLSE
LIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRMDTPQGEVWLEKAPAPAEAARDRVPGWLPMPLRFLLGDSMV
SPSLLRRAKAGDVLLISRPAQTVSCNGRAIGTYQWTEEGIIMEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDE
LRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDVE

Sequences:

>Translated_296_residues
MRLALRQVDGAALALRRCGEAWAGQDVRIAYPPSHGCWLKVAGADGSWQGWLQPRAWLRHMAPELASLASAAGMDDRLSE
LIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRMDTPQGEVWLEKAPAPAEAARDRVPGWLPMPLRFLLGDSMV
SPSLLRRAKAGDVLLISRPAQTVSCNGRAIGTYQWTEEGIIMEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDE
LRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDVE
>Mature_296_residues
MRLALRQVDGAALALRRCGEAWAGQDVRIAYPPSHGCWLKVAGADGSWQGWLQPRAWLRHMAPELASLASAAGMDDRLSE
LIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRMDTPQGEVWLEKAPAPAEAARDRVPGWLPMPLRFLLGDSMV
SPSLLRRAKAGDVLLISRPAQTVSCNGRAIGTYQWTEEGIIMEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDE
LRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDVE

Specific function: Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001543
- InterPro:   IPR003283
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 32434; Mature: 32434

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLALRQVDGAALALRRCGEAWAGQDVRIAYPPSHGCWLKVAGADGSWQGWLQPRAWLRH
CCCHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHH
MAPELASLASAAGMDDRLSELIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRM
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEE
DTPQGEVWLEKAPAPAEAARDRVPGWLPMPLRFLLGDSMVSPSLLRRAKAGDVLLISRPA
CCCCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCEEEEECCC
QTVSCNGRAIGTYQWTEEGIIMEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDE
CEEECCCEEEEEEEECCCCEEEEECHHHHHHHHCCCCHHHHCCCEEEEEEHHHCCCCHHH
LRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDVE
HHHHHHHCCCCCCCCCHHEEEEEECCEEECCCCEEEECCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MRLALRQVDGAALALRRCGEAWAGQDVRIAYPPSHGCWLKVAGADGSWQGWLQPRAWLRH
CCCHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHH
MAPELASLASAAGMDDRLSELIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRM
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEE
DTPQGEVWLEKAPAPAEAARDRVPGWLPMPLRFLLGDSMVSPSLLRRAKAGDVLLISRPA
CCCCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCEEEEECCC
QTVSCNGRAIGTYQWTEEGIIMEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDE
CEEECCCEEEEEEEECCCCEEEEECHHHHHHHHCCCCHHHHCCCEEEEEEHHHCCCCHHH
LRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDVE
HHHHHHHCCCCCCCCCHHEEEEEECCEEECCCCEEEECCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7638176 [H]