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The map label for this gene is spaT [H]

Identifier: 34498075

GI number: 34498075

Start: 2828715

End: 2829218

Strand: Reverse

Name: spaT [H]

Synonym: CV_2620

Alternate gene names: 34498075

Gene position: 2829218-2828715 (Counterclockwise)

Preceding gene: 34498076

Following gene: 34498074

Centisome position: 59.55

GC content: 58.93

Gene sequence:

>504_bases
ATGAACGCTAATGAAAACGTCAGCGACGACCGTTTTGCAGAGATGGTCTGGGAGGCCGTGAGCGGCGGCGCCACGTTGAA
AGACGTGCACGGGATTCCTCAGGACATGATGGAAGGCCTGTACGCCCACGCTTACGATTTTTACCACAAGGGACGGCTCG
ACGAAGCGGAAACCTTTTTCCGTTTCCTCTGCATCTACGACTTCTACAACCCCGACTACATCATGGGCCTGGCGGCGGTG
TGCCAGCTGAAGAAGCAGTTCCAGAAGGCGGTCGACCTGTATGCGGTCGCCTTCGCGCTGAGCAAGAACGACTACCGGCC
GGTGTTCTTCACCGGCCAGTGCCAGCTGTTCATGCGCAAGGCCGCCAAGGCCAGGCAATGCTTCGAACTGGTGTGCGAGC
AAAGCGGCGACGAGTCGCTGCGCGACAAGGCGCAGGTGTATCTCGACAGCTTGCAGGAAGCGGAGGCCGAGCAGTCCCGT
CAGCAGGAAAAGGAACAAGCATGA

Upstream 100 bases:

>100_bases
TTGACCCCGGCGGGCGCGGTTAAATGACGCTGTCCAGGCTGAAAGGCCGGGACGCCAGCCAGCTCTGCCGGGTTGGTGAC
CTTACTCAGGAGCAGATTTG

Downstream 100 bases:

>100_bases
GTGACGCAAGCGCAATCAGCCGCAGCGCATACCTGCACAATCCCAAGCTGGCCGAAACCGCGTTCGAGAGCGTCCGCAAG
GACGGCACCTTCCTCGACGC

Product: surface presentation of antigens secretory protein

Products: NA

Alternate protein names: Salmonella invasin chaperone [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MNANENVSDDRFAEMVWEAVSGGATLKDVHGIPQDMMEGLYAHAYDFYHKGRLDEAETFFRFLCIYDFYNPDYIMGLAAV
CQLKKQFQKAVDLYAVAFALSKNDYRPVFFTGQCQLFMRKAAKARQCFELVCEQSGDESLRDKAQVYLDSLQEAEAEQSR
QQEKEQA

Sequences:

>Translated_167_residues
MNANENVSDDRFAEMVWEAVSGGATLKDVHGIPQDMMEGLYAHAYDFYHKGRLDEAETFFRFLCIYDFYNPDYIMGLAAV
CQLKKQFQKAVDLYAVAFALSKNDYRPVFFTGQCQLFMRKAAKARQCFELVCEQSGDESLRDKAQVYLDSLQEAEAEQSR
QQEKEQA
>Mature_167_residues
MNANENVSDDRFAEMVWEAVSGGATLKDVHGIPQDMMEGLYAHAYDFYHKGRLDEAETFFRFLCIYDFYNPDYIMGLAAV
CQLKKQFQKAVDLYAVAFALSKNDYRPVFFTGQCQLFMRKAAKARQCFELVCEQSGDESLRDKAQVYLDSLQEAEAEQSR
QQEKEQA

Specific function: Type III secretion-associated chaperone required for sipB and sipC stabilization. Prevents premature association of sipB with sipC, which may lead to their targeting for degradation. Along with invF, required for transcription activation of sigDE (sopB pi

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lcrH/sycD chaperone family [H]

Homologues:

Organism=Escherichia coli, GI1789215, Length=147, Percent_Identity=36.0544217687075, Blast_Score=116, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005415
- InterPro:   IPR016379
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 19237; Mature: 19237

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANENVSDDRFAEMVWEAVSGGATLKDVHGIPQDMMEGLYAHAYDFYHKGRLDEAETFF
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
RFLCIYDFYNPDYIMGLAAVCQLKKQFQKAVDLYAVAFALSKNDYRPVFFTGQCQLFMRK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHH
AAKARQCFELVCEQSGDESLRDKAQVYLDSLQEAEAEQSRQQEKEQA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNANENVSDDRFAEMVWEAVSGGATLKDVHGIPQDMMEGLYAHAYDFYHKGRLDEAETFF
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
RFLCIYDFYNPDYIMGLAAVCQLKKQFQKAVDLYAVAFALSKNDYRPVFFTGQCQLFMRK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHH
AAKARQCFELVCEQSGDESLRDKAQVYLDSLQEAEAEQSRQQEKEQA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA