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The map label for this gene is sseD

Identifier: 34498030

GI number: 34498030

Start: 2779424

End: 2780020

Strand: Reverse

Name: sseD

Synonym: CV_2575

Alternate gene names: NA

Gene position: 2780020-2779424 (Counterclockwise)

Preceding gene: 34498031

Following gene: 34498029

Centisome position: 58.51

GC content: 56.11

Gene sequence:

>597_bases
ATGGATATTAACAAAGTTGGAGTCTCGAACACGGTACCAACCGTCCCACAGCAGCTTTCGGGACAGAGTGTGGATAAGGG
CAGTACTGGGGTATATGCCACCATAGACAACCTGATTGCGATGCTGCAGAAAATGAACATCGATATCCGCGACATGGAGC
GCGATTTCCATGCCGCTGGCCAGCAGCGGGCAGCGGCTGTCCAGTTAAAGTCGATCGATACCAAGCTGGAGAGCATCGAA
CTTAAGTACAAGGCTGCGTGGAAGAACGCCAGCGCTAAAGTCCTGTCAGGATTTTTGAGTGCGGGCGGCGCGGCCATCGG
AGGAGTCGCGGGCTCGGGGGGAGACCTGATGTCCACGGGGCTGTCGGGGGTGGGCAAAGCGGCGGAGGGCGGCATTAACT
GGGGTACCGCTAGCCTAACACGCGATGCTGAGCAGAAGAATATTCTTGGCGAATTCCAGGCTGATCATGCTGCCGAGCGG
TATAAAGCGTTGAGTGCCGCTGCCGAGAAGGCGGCCGAAGCATCGAGCCGCATGCATGATTTGACGCGTCAGCTGATGAG
CATGCAAGAGCGAATGATGTCGGTCGTCAAAATTTAA

Upstream 100 bases:

>100_bases
GATGGCCAAAGCTGGGTTCGCCGGTGAAGCACAAGCAGTGAAATCAATTATCGTGACACCACAAAGTGGCACGCAACATT
TGTTTAGGAAAGTTATCATG

Downstream 100 bases:

>100_bases
CTCCACTTATGAATCGTGAGCGGATATGGGTTTTCCCATATCCGCCGAATGGAGAGTCGAAATGCAAGAAATGAATATCA
AACCGGATGTCGTTACGCAA

Product: secretion system effector

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MDINKVGVSNTVPTVPQQLSGQSVDKGSTGVYATIDNLIAMLQKMNIDIRDMERDFHAAGQQRAAAVQLKSIDTKLESIE
LKYKAAWKNASAKVLSGFLSAGGAAIGGVAGSGGDLMSTGLSGVGKAAEGGINWGTASLTRDAEQKNILGEFQADHAAER
YKALSAAAEKAAEASSRMHDLTRQLMSMQERMMSVVKI

Sequences:

>Translated_198_residues
MDINKVGVSNTVPTVPQQLSGQSVDKGSTGVYATIDNLIAMLQKMNIDIRDMERDFHAAGQQRAAAVQLKSIDTKLESIE
LKYKAAWKNASAKVLSGFLSAGGAAIGGVAGSGGDLMSTGLSGVGKAAEGGINWGTASLTRDAEQKNILGEFQADHAAER
YKALSAAAEKAAEASSRMHDLTRQLMSMQERMMSVVKI
>Mature_198_residues
MDINKVGVSNTVPTVPQQLSGQSVDKGSTGVYATIDNLIAMLQKMNIDIRDMERDFHAAGQQRAAAVQLKSIDTKLESIE
LKYKAAWKNASAKVLSGFLSAGGAAIGGVAGSGGDLMSTGLSGVGKAAEGGINWGTASLTRDAEQKNILGEFQADHAAER
YKALSAAAEKAAEASSRMHDLTRQLMSMQERMMSVVKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20860; Mature: 20860

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINKVGVSNTVPTVPQQLSGQSVDKGSTGVYATIDNLIAMLQKMNIDIRDMERDFHAAG
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QQRAAAVQLKSIDTKLESIELKYKAAWKNASAKVLSGFLSAGGAAIGGVAGSGGDLMSTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHH
LSGVGKAAEGGINWGTASLTRDAEQKNILGEFQADHAAERYKALSAAAEKAAEASSRMHD
HHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRQLMSMQERMMSVVKI
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDINKVGVSNTVPTVPQQLSGQSVDKGSTGVYATIDNLIAMLQKMNIDIRDMERDFHAAG
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QQRAAAVQLKSIDTKLESIELKYKAAWKNASAKVLSGFLSAGGAAIGGVAGSGGDLMSTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHH
LSGVGKAAEGGINWGTASLTRDAEQKNILGEFQADHAAERYKALSAAAEKAAEASSRMHD
HHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRQLMSMQERMMSVVKI
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA