| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34497892
Identifier: 34497892
GI number: 34497892
Start: 2622462
End: 2622980
Strand: Reverse
Name: 34497892
Synonym: CV_2437
Alternate gene names: NA
Gene position: 2622980-2622462 (Counterclockwise)
Preceding gene: 34497896
Following gene: 34497891
Centisome position: 55.21
GC content: 46.05
Gene sequence:
>519_bases ATGAAACAAATCTCCTTCCTCCTGGCCAGCATATTGCTGGCCTTTGTCTTGACCTCCTGCGCCACCACCAATGCAGCGGA ATCCAATGATCCTTACCTGAGGAATGGCATTGGCTTGAGTGTCTATTCTGCAAACTATGTTAATCGGGCGGTGTTCTTCC GTTTGGATGATGGGGTTAATGGAGGCGGAGCCCCGGCGGCCGCAAAAGATGGAAAGCCAGGCACGGGCGGTTCTATGTGT TGTTTCAACATAACCGACTTGAAGAAGCCAGTGAAGATTGAGCTGAATTGGCACTCTGTATCCGAGCCGCCTGTCATGGG TCCTGATCAGAATTTTATAGAAGGAAAGGTTTTAATTCCTCCAGTAAAAAAAATAGTAACAGCCAGATTGCCTCAGAGAT TGCCACGCATTATCCCGAATGATCATATAAATAGCGAAGATGTGATGTGCGTAGTAATCAGAGACCTTGAAAAGGTTGAA TTAAAATACGCTAACGAATACGATTGCAGGGATAAGTAG
Upstream 100 bases:
>100_bases TAGCCAAACCGCCTGTTCGTCATTCACAAAAGGACAGGTGCACGAATGCGGCATTGTGGTATGGTGCTAGCTTGCTTATA ACTGCCTCAACTATAAGACA
Downstream 100 bases:
>100_bases ATGACTCTCAGGCAAGCGGGTGCTTACATCGACGATCAGGCATTATTAGCTGCACATAAAGCCGCCAAAATGGCTAGATT GTCGTGCGAAATCGGTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MKQISFLLASILLAFVLTSCATTNAAESNDPYLRNGIGLSVYSANYVNRAVFFRLDDGVNGGGAPAAAKDGKPGTGGSMC CFNITDLKKPVKIELNWHSVSEPPVMGPDQNFIEGKVLIPPVKKIVTARLPQRLPRIIPNDHINSEDVMCVVIRDLEKVE LKYANEYDCRDK
Sequences:
>Translated_172_residues MKQISFLLASILLAFVLTSCATTNAAESNDPYLRNGIGLSVYSANYVNRAVFFRLDDGVNGGGAPAAAKDGKPGTGGSMC CFNITDLKKPVKIELNWHSVSEPPVMGPDQNFIEGKVLIPPVKKIVTARLPQRLPRIIPNDHINSEDVMCVVIRDLEKVE LKYANEYDCRDK >Mature_172_residues MKQISFLLASILLAFVLTSCATTNAAESNDPYLRNGIGLSVYSANYVNRAVFFRLDDGVNGGGAPAAAKDGKPGTGGSMC CFNITDLKKPVKIELNWHSVSEPPVMGPDQNFIEGKVLIPPVKKIVTARLPQRLPRIIPNDHINSEDVMCVVIRDLEKVE LKYANEYDCRDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18852; Mature: 18852
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQISFLLASILLAFVLTSCATTNAAESNDPYLRNGIGLSVYSANYVNRAVFFRLDDGVN CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCEEEEEEECCCCC GGGAPAAAKDGKPGTGGSMCCFNITDLKKPVKIELNWHSVSEPPVMGPDQNFIEGKVLIP CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECC PVKKIVTARLPQRLPRIIPNDHINSEDVMCVVIRDLEKVELKYANEYDCRDK CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHEEECCCCCCCCC >Mature Secondary Structure MKQISFLLASILLAFVLTSCATTNAAESNDPYLRNGIGLSVYSANYVNRAVFFRLDDGVN CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCEEEEEEECCCCC GGGAPAAAKDGKPGTGGSMCCFNITDLKKPVKIELNWHSVSEPPVMGPDQNFIEGKVLIP CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECC PVKKIVTARLPQRLPRIIPNDHINSEDVMCVVIRDLEKVELKYANEYDCRDK CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA