Click here to switch to the map view.

The map label for this gene is nlpD [H]

Identifier: 33863023

GI number: 33863023

Start: 818913

End: 819920

Strand: Direct

Name: nlpD [H]

Synonym: PMT0751

Alternate gene names: 33863023

Gene position: 818913-819920 (Clockwise)

Preceding gene: 33863022

Following gene: 33863024

Centisome position: 33.97

GC content: 45.04

Gene sequence:

>1008_bases
ATGAAGCCCCTGTTGTTGCTTATCTCTTCCTTTGCAGCACCAGTGCTTGCGTTAGGAAACCTTGGGTCCTTACCTGGCTA
TGCAGATAGTGCTGTAGGGGAGAAGGTCAAGATCTCAAGCACAACCTCACAGCAACTGATATGGATAAAAGTTGCCTTGC
CAATAACCATAGAGGAACTTGCAGGCAAGCTCGGACTGAAAGCGACTGAACTGTCAAAACTCAATAAAAATTCATCAGAT
ACAGAACTGAACAAAGGCAGTTGGGTTGTTTTGCCAAGATCTGTTCATGGCCGCTTGGGTCGAATCAGTTACCTGGATTC
AGATGAGGCACTGCTGCATGACCCTATTAAAATACTCGACAACTCAAGCAACAAAACCAATCGCTTGAATCGACAACTTG
ATGAAACTAAGAAAAAAAATAATTTTTACTCTTTCAATGGTCTAAATAAGAATAAAAATCAAGTCCAGGTCCAAACAAAG
ATAAGTAGCAACAACATCCTCAAAAAGCAGTGTTCAATTGAGTCTCCATGCAACTGCCCCACCTGCTTAGTTGTTGAATC
ACAAGTGAACCCATCAGATCTATTCACCAGTAGCAATGGCATGCTCCGGCTAGGAACCATTGATTCTGATTCCTACATAT
GGCCTACTAAAGGTGTGTTCACATCTGGTTTCGGATGGAGGTGGGGGAGAATGCATCAGGGTATTGACATCGCCAATCTG
ACGGGCACACCCATCGTGGCTTCTAAAGACGGAATTGTGACCCATGCTGGTTGGATGGCTGGTTATGGTTATCTTGTGGA
AATCTCTCACTCAGACGGTGCATCGACTAGATACGCACACAACAGCAAACTCTTAGTCCGCAAAGGCCAGCTTGTACCCC
AAGGAGCTACCATCTCAAAAATGGGCAGTACTGGGCGTAGTACTGGGCCACATCTTCATTTTGAGATCAGAAAGAAGGGT
GGCATAGCCATGAATCCAAGAACGCTACTTCCAGCCGATATGGTCTGA

Upstream 100 bases:

>100_bases
CTTCTGCCCCCCCTTGCCTAATCGAAGGGAGATCAGCTAACTTCTCCCGGACTCCGGCCAAATTCGGCTTGATAGGGGTT
TTGAACATCGACTTTATTGA

Downstream 100 bases:

>100_bases
TCGGAAAATGCCCATCGTTTATTGTTGTTAACGACAAGGCTCGGTAGCTCAGCTGGTTAGAGCGTGGGATTCATAACCCC
AAGGTCGGGAGTTCAAGTCT

Product: M23/M37 familypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVGEKVKISSTTSQQLIWIKVALPITIEELAGKLGLKATELSKLNKNSSD
TELNKGSWVVLPRSVHGRLGRISYLDSDEALLHDPIKILDNSSNKTNRLNRQLDETKKKNNFYSFNGLNKNKNQVQVQTK
ISSNNILKKQCSIESPCNCPTCLVVESQVNPSDLFTSSNGMLRLGTIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANL
TGTPIVASKDGIVTHAGWMAGYGYLVEISHSDGASTRYAHNSKLLVRKGQLVPQGATISKMGSTGRSTGPHLHFEIRKKG
GIAMNPRTLLPADMV

Sequences:

>Translated_335_residues
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVGEKVKISSTTSQQLIWIKVALPITIEELAGKLGLKATELSKLNKNSSD
TELNKGSWVVLPRSVHGRLGRISYLDSDEALLHDPIKILDNSSNKTNRLNRQLDETKKKNNFYSFNGLNKNKNQVQVQTK
ISSNNILKKQCSIESPCNCPTCLVVESQVNPSDLFTSSNGMLRLGTIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANL
TGTPIVASKDGIVTHAGWMAGYGYLVEISHSDGASTRYAHNSKLLVRKGQLVPQGATISKMGSTGRSTGPHLHFEIRKKG
GIAMNPRTLLPADMV
>Mature_335_residues
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVGEKVKISSTTSQQLIWIKVALPITIEELAGKLGLKATELSKLNKNSSD
TELNKGSWVVLPRSVHGRLGRISYLDSDEALLHDPIKILDNSSNKTNRLNRQLDETKKKNNFYSFNGLNKNKNQVQVQTK
ISSNNILKKQCSIESPCNCPTCLVVESQVNPSDLFTSSNGMLRLGTIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANL
TGTPIVASKDGIVTHAGWMAGYGYLVEISHSDGASTRYAHNSKLLVRKGQLVPQGATISKMGSTGRSTGPHLHFEIRKKG
GIAMNPRTLLPADMV

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=47.0588235294118, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081989, Length=85, Percent_Identity=47.0588235294118, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082174, Length=121, Percent_Identity=40.495867768595, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=35.5371900826446, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 36429; Mature: 36429

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVGEKVKISSTTSQQLIWIKVALPITIEEL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEEEECCCCCEEEEEEEECCEEHHHH
AGKLGLKATELSKLNKNSSDTELNKGSWVVLPRSVHGRLGRISYLDSDEALLHDPIKILD
HHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCEEEEECCCCHHHHCCHHEEC
NSSNKTNRLNRQLDETKKKNNFYSFNGLNKNKNQVQVQTKISSNNILKKQCSIESPCNCP
CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCEEHHHCCCCCCCCCC
TCLVVESQVNPSDLFTSSNGMLRLGTIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANL
EEEEEECCCCHHHHEECCCCEEEEEEECCCCEECCCCCCEECCCCCCCCHHCCCCEEEEC
TGTPIVASKDGIVTHAGWMAGYGYLVEISHSDGASTRYAHNSKLLVRKGQLVPQGATISK
CCCCEEECCCCCEEECCHHCCCEEEEEEECCCCCCCEEECCCEEEEECCCCCCCCCCHHH
MGSTGRSTGPHLHFEIRKKGGIAMNPRTLLPADMV
CCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MKPLLLLISSFAAPVLALGNLGSLPGYADSAVGEKVKISSTTSQQLIWIKVALPITIEEL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEEEECCCCCEEEEEEEECCEEHHHH
AGKLGLKATELSKLNKNSSDTELNKGSWVVLPRSVHGRLGRISYLDSDEALLHDPIKILD
HHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCEEEEECCCCHHHHCCHHEEC
NSSNKTNRLNRQLDETKKKNNFYSFNGLNKNKNQVQVQTKISSNNILKKQCSIESPCNCP
CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCEEHHHCCCCCCCCCC
TCLVVESQVNPSDLFTSSNGMLRLGTIDSDSYIWPTKGVFTSGFGWRWGRMHQGIDIANL
EEEEEECCCCHHHHEECCCCEEEEEEECCCCEECCCCCCEECCCCCCCCHHCCCCEEEEC
TGTPIVASKDGIVTHAGWMAGYGYLVEISHSDGASTRYAHNSKLLVRKGQLVPQGATISK
CCCCEEECCCCCEEECCHHCCCEEEEEEECCCCCCCEEECCCEEEEECCCCCCCCCCHHH
MGSTGRSTGPHLHFEIRKKGGIAMNPRTLLPADMV
CCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]