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The map label for this gene is rfbA [H]

Identifier: 33862382

GI number: 33862382

Start: 124496

End: 125308

Strand: Reverse

Name: rfbA [H]

Synonym: PMT0109

Alternate gene names: 33862382

Gene position: 125308-124496 (Counterclockwise)

Preceding gene: 33862383

Following gene: 33862381

Centisome position: 5.2

GC content: 38.62

Gene sequence:

>813_bases
ATGAAAAAAAAGCTCTCTATCGTAAACTCGTACTATAGAAACAGGGAATTAATTAGACTATTTATAAATAGGGATATTAC
GAGCAGGTACAAAGGGTCACAACTAGGGCTGGCATGGACTGCGATAAACCCAATAGTGATGCTAAGCATTTACACACTAG
TCTTTTCACAAATTTTCAAAGCACGCTGGGGCGTAAGCACAGAGAATCAAGGGCCTGTGTATTTCGCAATAAATTTATTT
GCAGGCCTTATTGTTTTTAATATCTTTGCAGAATGCGCAACCAGAGCCCCAACGCTGATCACAGGCAATCCTAACTACGT
AAAAAAAATAGTTTTTCCCTTAGAGATCCTAGGGACTATGGTGACAGGTAGTGCTTTATTTCATGCTCTGACGAGCACTA
GTATTTTGTTAATTCTAAAAATTATAGTAGATGGAACAATTCCGTTTACAGTGCTTATGCTGCCGATGGTTTGGGGACCA
CTGATACTGGGCTGTCTAGGGCTCACATGGTTACTAGCTACCATAGGCGTGTTCATACGTGATGTGAACCAATTAATAAA
TTCAGTGGTTAGTATGTGCATGTTTTTAAGTCCAATATTTTATCCATCAAGTGCAATACCGCAAGACCTAATATGGTTGG
CTAGAATTAATCCTCTTGCACAGACGATAGAGCAAACAAGGCAAATACTTATCGAAGGAATAGCACCTTCAGGATTACAG
ATAGCAGTACAATTTCTAATATCAATTGGCTGGTGTGAAATCACCCTTAGGATTTTAAAAAATGCACAAAGCGAGTTTGG
AGATATACTTTAA

Upstream 100 bases:

>100_bases
ATGAGTAACAGGCGAAGCAAACTAATAGAATTCATTACTGGGGCTATAAAAGCAGGAAAACGAAACTAATTAACAATCAA
CTCCCTCACCATATAAGACA

Downstream 100 bases:

>100_bases
TGTATTCAACAACACAACATCAATCTCCTGAAACTGTTGTTACAGTATCATCCTTGGGTAAAGCATATAAAATTTACAAC
AGCAAAAGGGATAGAGCAAA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKKKLSIVNSYYRNRELIRLFINRDITSRYKGSQLGLAWTAINPIVMLSIYTLVFSQIFKARWGVSTENQGPVYFAINLF
AGLIVFNIFAECATRAPTLITGNPNYVKKIVFPLEILGTMVTGSALFHALTSTSILLILKIIVDGTIPFTVLMLPMVWGP
LILGCLGLTWLLATIGVFIRDVNQLINSVVSMCMFLSPIFYPSSAIPQDLIWLARINPLAQTIEQTRQILIEGIAPSGLQ
IAVQFLISIGWCEITLRILKNAQSEFGDIL

Sequences:

>Translated_270_residues
MKKKLSIVNSYYRNRELIRLFINRDITSRYKGSQLGLAWTAINPIVMLSIYTLVFSQIFKARWGVSTENQGPVYFAINLF
AGLIVFNIFAECATRAPTLITGNPNYVKKIVFPLEILGTMVTGSALFHALTSTSILLILKIIVDGTIPFTVLMLPMVWGP
LILGCLGLTWLLATIGVFIRDVNQLINSVVSMCMFLSPIFYPSSAIPQDLIWLARINPLAQTIEQTRQILIEGIAPSGLQ
IAVQFLISIGWCEITLRILKNAQSEFGDIL
>Mature_270_residues
MKKKLSIVNSYYRNRELIRLFINRDITSRYKGSQLGLAWTAINPIVMLSIYTLVFSQIFKARWGVSTENQGPVYFAINLF
AGLIVFNIFAECATRAPTLITGNPNYVKKIVFPLEILGTMVTGSALFHALTSTSILLILKIIVDGTIPFTVLMLPMVWGP
LILGCLGLTWLLATIGVFIRDVNQLINSVVSMCMFLSPIFYPSSAIPQDLIWLARINPLAQTIEQTRQILIEGIAPSGLQ
IAVQFLISIGWCEITLRILKNAQSEFGDIL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30100; Mature: 30100

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLSIVNSYYRNRELIRLFINRDITSRYKGSQLGLAWTAINPIVMLSIYTLVFSQIFK
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARWGVSTENQGPVYFAINLFAGLIVFNIFAECATRAPTLITGNPNYVKKIVFPLEILGTM
HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH
VTGSALFHALTSTSILLILKIIVDGTIPFTVLMLPMVWGPLILGCLGLTWLLATIGVFIR
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVNQLINSVVSMCMFLSPIFYPSSAIPQDLIWLARINPLAQTIEQTRQILIEGIAPSGLQ
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
IAVQFLISIGWCEITLRILKNAQSEFGDIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKKLSIVNSYYRNRELIRLFINRDITSRYKGSQLGLAWTAINPIVMLSIYTLVFSQIFK
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARWGVSTENQGPVYFAINLFAGLIVFNIFAECATRAPTLITGNPNYVKKIVFPLEILGTM
HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH
VTGSALFHALTSTSILLILKIIVDGTIPFTVLMLPMVWGPLILGCLGLTWLLATIGVFIR
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVNQLINSVVSMCMFLSPIFYPSSAIPQDLIWLARINPLAQTIEQTRQILIEGIAPSGLQ
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
IAVQFLISIGWCEITLRILKNAQSEFGDIL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]