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The map label for this gene is 30995439

Identifier: 30995439

GI number: 30995439

Start: 1375488

End: 1376003

Strand: Reverse

Name: 30995439

Synonym: HI1296

Alternate gene names: NA

Gene position: 1376003-1375488 (Counterclockwise)

Preceding gene: 16273213

Following gene: 30995438

Centisome position: 75.19

GC content: 37.79

Gene sequence:

>516_bases
TTGACGAGTTTATTACTTATTTTTACCGTACTTTCTGCTTGTTCTCGCGAAAAAAATACGTGTCGTGTGGTTAAAATTAG
TGATGGCGATACGCTCACTTGCCTCACTAAAGGCAATAAATCCATTAAAGTTCGTTTAGCCGAAATTGATGCGCCAGAAA
AATCTCAAGCCTTTGGGCAAAAATCGAAAAAAACCTTGTCTGATCTGGTTTATCAAAAAAATGTTCGCCTTGCGCGAAAA
GGAAAAGATCGCTATCAACGCACCTTAGCGGTGGTTTATTATCAAAAACAAAATATTAATTTAGAAATGGTTAAACAGGG
TATGGCATGGGCTTATAAGCAATATTCCCATGATCCGATTTATCTTCAAGCACAAGAAAATGCACAAGCCAAAGGAATTG
GTCTTTGGGCAGACAATAATCCAATTGAACCAAGTCAATGGCGCAGACAAGAGAAAATTAATATGGCTTTTGATTATCAA
ACGTTCCCGTCAAGCATTTCCCTATTTCCAACGTGA

Upstream 100 bases:

>100_bases
AATTATTTTACGCTTTTTTTTGCTAACTTGAGCCATTTTTTCGGTAAAATAACCAGACTTAGATCAAAAACTTTGCAAAA
TGATAAATCGAAAAATACTA

Downstream 100 bases:

>100_bases
AGATGCGGTTATTTATTTAGATAACGCCGCCACCACGTTGAAACCTCAAGTATTAATTGATCGCACCGCTGAATTTTATG
CGTCTGCAGGTTCGGTGCAT

Product: nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTSLLLIFTVLSACSREKNTCRVVKISDGDTLTCLTKGNKSIKVRLAEIDAPEKSQAFGQKSKKTLSDLVYQKNVRLARK
GKDRYQRTLAVVYYQKQNINLEMVKQGMAWAYKQYSHDPIYLQAQENAQAKGIGLWADNNPIEPSQWRRQEKINMAFDYQ
TFPSSISLFPT

Sequences:

>Translated_171_residues
MTSLLLIFTVLSACSREKNTCRVVKISDGDTLTCLTKGNKSIKVRLAEIDAPEKSQAFGQKSKKTLSDLVYQKNVRLARK
GKDRYQRTLAVVYYQKQNINLEMVKQGMAWAYKQYSHDPIYLQAQENAQAKGIGLWADNNPIEPSQWRRQEKINMAFDYQ
TFPSSISLFPT
>Mature_170_residues
TSLLLIFTVLSACSREKNTCRVVKISDGDTLTCLTKGNKSIKVRLAEIDAPEKSQAFGQKSKKTLSDLVYQKNVRLARKG
KDRYQRTLAVVYYQKQNINLEMVKQGMAWAYKQYSHDPIYLQAQENAQAKGIGLWADNNPIEPSQWRRQEKINMAFDYQT
FPSSISLFPT

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 19590; Mature: 19459

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS01123 TNASE_1 ; PS01284 TNASE_2 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLLLIFTVLSACSREKNTCRVVKISDGDTLTCLTKGNKSIKVRLAEIDAPEKSQAFGQ
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHH
KSKKTLSDLVYQKNVRLARKGKDRYQRTLAVVYYQKQNINLEMVKQGMAWAYKQYSHDPI
HHHHHHHHHHHHCCCHHHHCCHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
YLQAQENAQAKGIGLWADNNPIEPSQWRRQEKINMAFDYQTFPSSISLFPT
EEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEECEECCCCEEECCC
>Mature Secondary Structure 
TSLLLIFTVLSACSREKNTCRVVKISDGDTLTCLTKGNKSIKVRLAEIDAPEKSQAFGQ
CHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHH
KSKKTLSDLVYQKNVRLARKGKDRYQRTLAVVYYQKQNINLEMVKQGMAWAYKQYSHDPI
HHHHHHHHHHHHCCCHHHHCCHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
YLQAQENAQAKGIGLWADNNPIEPSQWRRQEKINMAFDYQTFPSSISLFPT
EEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEECEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]