Click here to switch to the map view.

The map label for this gene is yclH [H]

Identifier: 29349734

GI number: 29349734

Start: 5699162

End: 5699815

Strand: Reverse

Name: yclH [H]

Synonym: BT_4326

Alternate gene names: 29349734

Gene position: 5699815-5699162 (Counterclockwise)

Preceding gene: 29349735

Following gene: 29349733

Centisome position: 91.05

GC content: 43.88

Gene sequence:

>654_bases
ATGAACGGCATGAATAGTATTCACTTACAGCAAACACTTCCCCAAGTGTTTGCTGACCGTAATTCGGTGACCTCTGATGT
ATGGCATCAGGACCTTATCTTCCGGAAAGGAGAAATGTATCTGATAGAAGCCGCCTCAGGCACCGGAAAATCATCGTTGT
GCAGCTATCTTTACGGCTATCGCAACGATTATCAAGGAATTATCAATTTCGATGAAACCAATATCAAAGCATATTCCGTG
AAGCAATGGGTAGACCTGAGAAAGCATTCACTGAGTATGCTTTTTCAAGACTTGCGTATCTTCACCGAACTTACAGCGAT
AGAAAACGTACAACTGAAGAATAACCTTACCGGACACAAGAAGAAAAAAGAGATTCTTTCATTATTCGAGAAGCTGGGTA
TCTCAGATAAACTGAACGTGAAAGCCGGAAAACTTTCTTTCGGCCAACAACAACGGGTCGCTTTTATCCGTGCATTCTGC
CAGCCGTTCGACTTCCTGTTTCTGGATGAGCCTATCAGCCATTTGGATGATGAGAACAGCCGCATCATGGGAGAAATCAT
CATTGACGAAGCCGGAAAACAAGGTGCCGGAGTCATCGCCACGTCCATTGGCAAACATATCGAACTGCCATACAAGAAGG
TGCTTCAACTATAA

Upstream 100 bases:

>100_bases
GAAACAAGCGAAACAGACCTTTGCCTGAAAGACAAAGATGTCAATGCCCTCAAACAAATCGTAGATTTTGCCAAGCAATT
CGCCGGCATGTAATTCGTCA

Downstream 100 bases:

>100_bases
TAGAATCTGCGTCATTCGCGCCTAAAAATATAAAAATACAAAATAATGAATACCCTTGTCTGGAAACTTCTCCGCCAACA
TATCAGTATCGGTCAGTTAG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNGMNSIHLQQTLPQVFADRNSVTSDVWHQDLIFRKGEMYLIEAASGTGKSSLCSYLYGYRNDYQGIINFDETNIKAYSV
KQWVDLRKHSLSMLFQDLRIFTELTAIENVQLKNNLTGHKKKKEILSLFEKLGISDKLNVKAGKLSFGQQQRVAFIRAFC
QPFDFLFLDEPISHLDDENSRIMGEIIIDEAGKQGAGVIATSIGKHIELPYKKVLQL

Sequences:

>Translated_217_residues
MNGMNSIHLQQTLPQVFADRNSVTSDVWHQDLIFRKGEMYLIEAASGTGKSSLCSYLYGYRNDYQGIINFDETNIKAYSV
KQWVDLRKHSLSMLFQDLRIFTELTAIENVQLKNNLTGHKKKKEILSLFEKLGISDKLNVKAGKLSFGQQQRVAFIRAFC
QPFDFLFLDEPISHLDDENSRIMGEIIIDEAGKQGAGVIATSIGKHIELPYKKVLQL
>Mature_217_residues
MNGMNSIHLQQTLPQVFADRNSVTSDVWHQDLIFRKGEMYLIEAASGTGKSSLCSYLYGYRNDYQGIINFDETNIKAYSV
KQWVDLRKHSLSMLFQDLRIFTELTAIENVQLKNNLTGHKKKKEILSLFEKLGISDKLNVKAGKLSFGQQQRVAFIRAFC
QPFDFLFLDEPISHLDDENSRIMGEIIIDEAGKQGAGVIATSIGKHIELPYKKVLQL

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1786703, Length=162, Percent_Identity=32.0987654320988, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081834, Length=174, Percent_Identity=31.6091954022989, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787105, Length=146, Percent_Identity=30.1369863013699, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790534, Length=176, Percent_Identity=28.9772727272727, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786253, Length=150, Percent_Identity=30.6666666666667, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786872, Length=138, Percent_Identity=36.9565217391304, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=163, Percent_Identity=31.2883435582822, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=161, Percent_Identity=24.8447204968944, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=166, Percent_Identity=30.7228915662651, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789991, Length=166, Percent_Identity=28.9156626506024, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789672, Length=152, Percent_Identity=29.6052631578947, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789873, Length=150, Percent_Identity=30, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786398, Length=156, Percent_Identity=28.8461538461538, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1790544, Length=187, Percent_Identity=28.3422459893048, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24721; Mature: 24721

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGMNSIHLQQTLPQVFADRNSVTSDVWHQDLIFRKGEMYLIEAASGTGKSSLCSYLYGY
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
RNDYQGIINFDETNIKAYSVKQWVDLRKHSLSMLFQDLRIFTELTAIENVQLKNNLTGHK
CCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCH
KKKEILSLFEKLGISDKLNVKAGKLSFGQQQRVAFIRAFCQPFDFLFLDEPISHLDDENS
HHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCC
RIMGEIIIDEAGKQGAGVIATSIGKHIELPYKKVLQL
EEEHEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHCC
>Mature Secondary Structure
MNGMNSIHLQQTLPQVFADRNSVTSDVWHQDLIFRKGEMYLIEAASGTGKSSLCSYLYGY
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
RNDYQGIINFDETNIKAYSVKQWVDLRKHSLSMLFQDLRIFTELTAIENVQLKNNLTGHK
CCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCH
KKKEILSLFEKLGISDKLNVKAGKLSFGQQQRVAFIRAFCQPFDFLFLDEPISHLDDENS
HHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCC
RIMGEIIIDEAGKQGAGVIATSIGKHIELPYKKVLQL
EEEHEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]