BacMap

Definition	Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession	NC_004663
Length	6,260,361

Click here to switch to the map view.

The map label for this gene is ydbJ [H]

Identifier: 29349726

GI number: 29349726

Start: 5687112

End: 5687816

Strand: Reverse

Name: ydbJ [H]

Synonym: BT_4318

Alternate gene names: 29349726

Gene position: 5687816-5687112 (Counterclockwise)

Preceding gene: 29349727

Following gene: 29349725

Centisome position: 90.85

GC content: 41.84

Gene sequence:

>705_bases
ATGATAAGCATCAATAATCTTCAAAAGAAATTCGGCGAAAAGTTAGCCGTGAACATAGATCACTATGAAATCAATCAAGG
CGATATGCTCGGATTGGTAGGAAACAACGGTGCCGGTAAAACAACACTTTTCCGGTTGATGCTCGACTTACTGAAAGCGG
ATAATGGGAATGTCGTCATTAACGAAATTGACGTCAGTCAAAGTGAAGACTGGAAAAACTTCACAGGTGCTTTCATTGAC
GATGGATTTCTGATAGACTACCTTACCCCGGAAGAGTATTTCTATTTTATCGGGAAAATGTACGGACTGAAAAAAGAAGA
GGTGGACGAACGCCTTCTGCCGTTCGAACGTCTGATGAGCGGAGAAGTGATCGGACAAAAGAAACTGATCCGTAACTACT
CAGCCGGTAATAAACAGAAAATCGGCATCATCTCCGCCATGCTTCATTATCCTCAGTTGCTGATACTCGACGAACCGTTC
AACTTCCTCGATCCCAGTTCGCAATCCATTATCAAACATATGCTCAAAAAGTACAGCGAAGAGCATAATGCAACTGTAAT
CATTTCCAGCCACAATCTGAATCATACGATAGATGTATGTCCGCGTATTGCCCTGCTGGAGAATGGCGTCATCATCCGGG
ATATTATGAATGAGAATAATTCAGCTGAAAAAGAACTGGAAGACTACTTCAATGTAGAAGAATAA

Upstream 100 bases:

>100_bases
TGAAACGGAGATACGAGAATATGGAAGGCTTCAGAGACAGTCGCCAATAAGAGATTTACGATTGAACCGATTAATCATTT
ACGATAAAAATACCAAGACA

Downstream 100 bases:

>100_bases
AGTTACTTATAATTTTACGATATACGAAAAGAAAGATAGCCGATGGGAGTGAACTTCAAACTAATCTTCATACTGACAGG
ACTGATCTTTATCCTTAGTT

Product: ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MISINNLQKKFGEKLAVNIDHYEINQGDMLGLVGNNGAGKTTLFRLMLDLLKADNGNVVINEIDVSQSEDWKNFTGAFID
DGFLIDYLTPEEYFYFIGKMYGLKKEEVDERLLPFERLMSGEVIGQKKLIRNYSAGNKQKIGIISAMLHYPQLLILDEPF
NFLDPSSQSIIKHMLKKYSEEHNATVIISSHNLNHTIDVCPRIALLENGVIIRDIMNENNSAEKELEDYFNVEE

Sequences:

>Translated_234_residues
MISINNLQKKFGEKLAVNIDHYEINQGDMLGLVGNNGAGKTTLFRLMLDLLKADNGNVVINEIDVSQSEDWKNFTGAFID
DGFLIDYLTPEEYFYFIGKMYGLKKEEVDERLLPFERLMSGEVIGQKKLIRNYSAGNKQKIGIISAMLHYPQLLILDEPF
NFLDPSSQSIIKHMLKKYSEEHNATVIISSHNLNHTIDVCPRIALLENGVIIRDIMNENNSAEKELEDYFNVEE
>Mature_234_residues
MISINNLQKKFGEKLAVNIDHYEINQGDMLGLVGNNGAGKTTLFRLMLDLLKADNGNVVINEIDVSQSEDWKNFTGAFID
DGFLIDYLTPEEYFYFIGKMYGLKKEEVDERLLPFERLMSGEVIGQKKLIRNYSAGNKQKIGIISAMLHYPQLLILDEPF
NFLDPSSQSIIKHMLKKYSEEHNATVIISSHNLNHTIDVCPRIALLENGVIIRDIMNENNSAEKELEDYFNVEE

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=208, Percent_Identity=28.8461538461538, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI30795238, Length=208, Percent_Identity=28.8461538461538, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=26.4705882352941, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=27.0531400966184, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=27.8538812785388, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI150417984, Length=216, Percent_Identity=30.0925925925926, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=26.046511627907, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI105990541, Length=188, Percent_Identity=27.6595744680851, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262624, Length=232, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI27262626, Length=232, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI27477115, Length=215, Percent_Identity=28.8372093023256, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=25.2475247524752, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI6005701, Length=198, Percent_Identity=24.2424242424242, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=28.0542986425339, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787370, Length=214, Percent_Identity=24.7663551401869, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI48994943, Length=213, Percent_Identity=25.8215962441315, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789032, Length=222, Percent_Identity=26.1261261261261, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=26.605504587156, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=21.3953488372093, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788165, Length=194, Percent_Identity=26.8041237113402, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87081791, Length=213, Percent_Identity=23.4741784037559, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=23.0046948356808, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=25.4716981132075, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=26.3392857142857, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082268, Length=222, Percent_Identity=26.5765765765766, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=211, Percent_Identity=23.2227488151659, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=25.5411255411255, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082267, Length=189, Percent_Identity=23.2804232804233, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787712, Length=214, Percent_Identity=24.2990654205607, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787500, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786253, Length=195, Percent_Identity=22.0512820512821, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=24.1071428571429, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=22.5225225225225, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=209, Percent_Identity=32.0574162679426, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71983510, Length=209, Percent_Identity=32.0574162679426, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71983516, Length=209, Percent_Identity=32.0574162679426, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=26.6666666666667, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI115533608, Length=226, Percent_Identity=26.1061946902655, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17510237, Length=217, Percent_Identity=25.8064516129032, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI25146777, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115532730, Length=223, Percent_Identity=29.1479820627803, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=199, Percent_Identity=23.6180904522613, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=214, Percent_Identity=27.1028037383178, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=29.4392523364486, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=29.4392523364486, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24582014, Length=243, Percent_Identity=26.7489711934156, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24582012, Length=243, Percent_Identity=26.7489711934156, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24648314, Length=213, Percent_Identity=25.8215962441315, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=23.696682464455, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24643674, Length=217, Percent_Identity=23.963133640553, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221512771, Length=206, Percent_Identity=23.3009708737864, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281362751, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24650853, Length=211, Percent_Identity=28.9099526066351, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221500365, Length=198, Percent_Identity=24.7474747474747, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007184, Length=198, Percent_Identity=24.7474747474747, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650855, Length=211, Percent_Identity=28.9099526066351, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573571, Length=210, Percent_Identity=23.3333333333333, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=210, Percent_Identity=23.3333333333333, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85725262, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26737; Mature: 26737

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISINNLQKKFGEKLAVNIDHYEINQGDMLGLVGNNGAGKTTLFRLMLDLLKADNGNVVI
CCCCHHHHHHCCCEEEEEECEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
NEIDVSQSEDWKNFTGAFIDDGFLIDYLTPEEYFYFIGKMYGLKKEEVDERLLPFERLMS
EEECCCCCCCCHHCCCCEECCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHC
GEVIGQKKLIRNYSAGNKQKIGIISAMLHYPQLLILDEPFNFLDPSSQSIIKHMLKKYSE
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC
EHNATVIISSHNLNHTIDVCPRIALLENGVIIRDIMNENNSAEKELEDYFNVEE
CCCCEEEEECCCCCCHHHHCCCEEHHHCCEEEEEHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MISINNLQKKFGEKLAVNIDHYEINQGDMLGLVGNNGAGKTTLFRLMLDLLKADNGNVVI
CCCCHHHHHHCCCEEEEEECEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
NEIDVSQSEDWKNFTGAFIDDGFLIDYLTPEEYFYFIGKMYGLKKEEVDERLLPFERLMS
EEECCCCCCCCHHCCCCEECCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHC
GEVIGQKKLIRNYSAGNKQKIGIISAMLHYPQLLILDEPFNFLDPSSQSIIKHMLKKYSE
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC
EHNATVIISSHNLNHTIDVCPRIALLENGVIIRDIMNENNSAEKELEDYFNVEE
CCCCEEEEECCCCCCHHHHCCCEEHHHCCEEEEEHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]