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The map label for this gene is nlpC [H]

Identifier: 29349725

GI number: 29349725

Start: 5686557

End: 5687069

Strand: Reverse

Name: nlpC [H]

Synonym: BT_4317

Alternate gene names: 29349725

Gene position: 5687069-5686557 (Counterclockwise)

Preceding gene: 29349726

Following gene: 29349724

Centisome position: 90.84

GC content: 48.34

Gene sequence:

>513_bases
ATGGGAGTGAACTTCAAACTAATCTTCATACTGACAGGACTGATCTTTATCCTTAGTTCCTGCCGCACGTCTGCTCCCCG
TCTGGATTACCAGGCACTGGCACGCGCCTCCATCCTGCTGGGCGTGGACATCAATATGGAAGATAACCACAAACTCTATC
TGGAATCGGCCGAATGGATTGGTGTTCCTTATCGTGGAGGCGGTGATTCAAAACGCGGTACCGACTGTTCGGGACTCACC
TACCAGATATACCGGAAAGTATACCGTACTCAGGTTCCGCGAAATACCGAAGACCTGAGAAAAGAAAGTACCAAAGTCGC
CAAACGGAATTTGCGAGAAGGCGATCTGGTATTCTTCAGCAGTAGCCGTTCCCGAAAAAAGGTAGCTCACGTAGGTATCT
ATCTCAAAAATGGGAAATTCATTCATGCCAGTACCAGCAAAGGAGTGATTGTCAGTCGACTGAGCGAAGACTATTACACC
AGACACTGGATATCCGGAGGAAGAATACGCTGA

Upstream 100 bases:

>100_bases
GAATGAGAATAATTCAGCTGAAAAAGAACTGGAAGACTACTTCAATGTAGAAGAATAAAGTTACTTATAATTTTACGATA
TACGAAAAGAAAGATAGCCG

Downstream 100 bases:

>100_bases
TTATCAACTTAAAAACATATAGAATCATGAAATCGTTTATTGGAGCAGTCATATTTATCTGCGTAGCGTTAAGCGCAAAC
GCACAGCTTTTATGGAAAGT

Product: putative lipoprotein protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MGVNFKLIFILTGLIFILSSCRTSAPRLDYQALARASILLGVDINMEDNHKLYLESAEWIGVPYRGGGDSKRGTDCSGLT
YQIYRKVYRTQVPRNTEDLRKESTKVAKRNLREGDLVFFSSSRSRKKVAHVGIYLKNGKFIHASTSKGVIVSRLSEDYYT
RHWISGGRIR

Sequences:

>Translated_170_residues
MGVNFKLIFILTGLIFILSSCRTSAPRLDYQALARASILLGVDINMEDNHKLYLESAEWIGVPYRGGGDSKRGTDCSGLT
YQIYRKVYRTQVPRNTEDLRKESTKVAKRNLREGDLVFFSSSRSRKKVAHVGIYLKNGKFIHASTSKGVIVSRLSEDYYT
RHWISGGRIR
>Mature_169_residues
GVNFKLIFILTGLIFILSSCRTSAPRLDYQALARASILLGVDINMEDNHKLYLESAEWIGVPYRGGGDSKRGTDCSGLTY
QIYRKVYRTQVPRNTEDLRKESTKVAKRNLREGDLVFFSSSRSRKKVAHVGIYLKNGKFIHASTSKGVIVSRLSEDYYTR
HWISGGRIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=125, Percent_Identity=37.6, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788001, Length=111, Percent_Identity=43.2432432432432, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=35.5072463768116, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1786421, Length=148, Percent_Identity=34.4594594594595, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 19325; Mature: 19193

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVNFKLIFILTGLIFILSSCRTSAPRLDYQALARASILLGVDINMEDNHKLYLESAEWI
CCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEEEECCCCCCCEEEEECCCEE
GVPYRGGGDSKRGTDCSGLTYQIYRKVYRTQVPRNTEDLRKESTKVAKRNLREGDLVFFS
ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
SSRSRKKVAHVGIYLKNGKFIHASTSKGVIVSRLSEDYYTRHWISGGRIR
CCCCCCEEEEEEEEEECCEEEEECCCCCEEEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GVNFKLIFILTGLIFILSSCRTSAPRLDYQALARASILLGVDINMEDNHKLYLESAEWI
CCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEEEECCCCCCCEEEEECCCEE
GVPYRGGGDSKRGTDCSGLTYQIYRKVYRTQVPRNTEDLRKESTKVAKRNLREGDLVFFS
ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
SSRSRKKVAHVGIYLKNGKFIHASTSKGVIVSRLSEDYYTRHWISGGRIR
CCCCCCEEEEEEEEEECCEEEEECCCCCEEEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]