| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349634
Identifier: 29349634
GI number: 29349634
Start: 5564890
End: 5565972
Strand: Reverse
Name: 29349634
Synonym: BT_4226
Alternate gene names: NA
Gene position: 5565972-5564890 (Counterclockwise)
Preceding gene: 29349635
Following gene: 29349633
Centisome position: 88.91
GC content: 38.32
Gene sequence:
>1083_bases ATGAAACGAATCCTAACTACCATACAAGAAAAAGCAAATAACATATTGTTATTCACAATATTGGCTGGTGCAATTACATC TTGTGATTCCATTTTGGATTACAATGAGAATTGTGACATCGAATATTGTGTCAAGTTCAAGTATGACTACAATATGGAAG AAAAGGATGTATTCGCCGAACAAGTAAGAACTGTTACTCTTTACGCTTTTGACGATAATAACAATCTTGTTTTCCAGAAC ACCGATGAAGGTGAGCCATTAGGAGAAGAAACCTACGCGATGAACGTAGATATAGATCTCTCGCAATACCACCTGGTGGT ATGGGCAGGATTAAATGATGAATCATTTGCAGTCCCTTTGCTATATCCCAATCAAGCTAAAATTGACGAATTAAGAGTAA AAACATTACGCAAAGAAGCTACTCGCAGCACCACCGAGGATGAAAAGGGACAATACATAGTAGACAACAGCCTACATTCA CTCTGGCATGGAGAGGTTAAAAAAGGAACTACCACTCGTAGCGGCAGACAGCAAATCACCGAAGTCTCATTAGTAAAAAA TACCAATACAATCCGTGTCGTTGTAGCACAAGTAAACCAATCAGGAGGACCTGTAACCCGCTTGACACAAAAAACTTTCG AATGCGCCATATACGACAATAATGGTTACATGAACTATGACAACACGCTATTAGAAGATAACTTATTGACTTACAAGCCA TACAATGTCACATCGGATGTAGTCAGTACCCGAGCTTTTAGTTCTGCAGATGAACCTGCCAAACAATACAACGGTATCGT TAGCGAAATGAGCGTGGCAAGACTTGTGGAAAGCCAAAAGCCGGAGTTGACAATCAAAAATACTGCTACTCAGGAAGTAT TATTCCAAAGTTCCGACTTGGTGAAATACTTCGAAGAAGTAGATGCCGAAAAATATAAAGATCGTAATTATTCTCTTCAA GAATACTTAGACCGAGAAGATAAATATGAACTAGTGATTTTTGTAGATGAGAAATTGGCACTCATCAAAACTGTAATCCA AGTAAACGACTGGATCATCCAACTCAATGATATCGAACTTTAA
Upstream 100 bases:
>100_bases TTTAGGGAGAAGTCTCTTCTCCCTAAATTATACTCCGAAAGAAGAGAGTATCACATTCAAACAAAACATCCGCTCTTTAA AAGCATAAAAAGTAAAAACA
Downstream 100 bases:
>100_bases AATAAAGCAAAAAATGAAATACTCTCATTTGACATATTATCTGCTAGCTATCTTATGCATGATGGCAACATCGTGTGTCT CAGACGGAGTCATGGGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MKRILTTIQEKANNILLFTILAGAITSCDSILDYNENCDIEYCVKFKYDYNMEEKDVFAEQVRTVTLYAFDDNNNLVFQN TDEGEPLGEETYAMNVDIDLSQYHLVVWAGLNDESFAVPLLYPNQAKIDELRVKTLRKEATRSTTEDEKGQYIVDNSLHS LWHGEVKKGTTTRSGRQQITEVSLVKNTNTIRVVVAQVNQSGGPVTRLTQKTFECAIYDNNGYMNYDNTLLEDNLLTYKP YNVTSDVVSTRAFSSADEPAKQYNGIVSEMSVARLVESQKPELTIKNTATQEVLFQSSDLVKYFEEVDAEKYKDRNYSLQ EYLDREDKYELVIFVDEKLALIKTVIQVNDWIIQLNDIEL
Sequences:
>Translated_360_residues MKRILTTIQEKANNILLFTILAGAITSCDSILDYNENCDIEYCVKFKYDYNMEEKDVFAEQVRTVTLYAFDDNNNLVFQN TDEGEPLGEETYAMNVDIDLSQYHLVVWAGLNDESFAVPLLYPNQAKIDELRVKTLRKEATRSTTEDEKGQYIVDNSLHS LWHGEVKKGTTTRSGRQQITEVSLVKNTNTIRVVVAQVNQSGGPVTRLTQKTFECAIYDNNGYMNYDNTLLEDNLLTYKP YNVTSDVVSTRAFSSADEPAKQYNGIVSEMSVARLVESQKPELTIKNTATQEVLFQSSDLVKYFEEVDAEKYKDRNYSLQ EYLDREDKYELVIFVDEKLALIKTVIQVNDWIIQLNDIEL >Mature_360_residues MKRILTTIQEKANNILLFTILAGAITSCDSILDYNENCDIEYCVKFKYDYNMEEKDVFAEQVRTVTLYAFDDNNNLVFQN TDEGEPLGEETYAMNVDIDLSQYHLVVWAGLNDESFAVPLLYPNQAKIDELRVKTLRKEATRSTTEDEKGQYIVDNSLHS LWHGEVKKGTTTRSGRQQITEVSLVKNTNTIRVVVAQVNQSGGPVTRLTQKTFECAIYDNNGYMNYDNTLLEDNLLTYKP YNVTSDVVSTRAFSSADEPAKQYNGIVSEMSVARLVESQKPELTIKNTATQEVLFQSSDLVKYFEEVDAEKYKDRNYSLQ EYLDREDKYELVIFVDEKLALIKTVIQVNDWIIQLNDIEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41329; Mature: 41329
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRILTTIQEKANNILLFTILAGAITSCDSILDYNENCDIEYCVKFKYDYNMEEKDVFAE CHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHH QVRTVTLYAFDDNNNLVFQNTDEGEPLGEETYAMNVDIDLSQYHLVVWAGLNDESFAVPL HCEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEE LYPNQAKIDELRVKTLRKEATRSTTEDEKGQYIVDNSLHSLWHGEVKKGTTTRSGRQQIT ECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCHHHHHH EVSLVKNTNTIRVVVAQVNQSGGPVTRLTQKTFECAIYDNNGYMNYDNTLLEDNLLTYKP EEEEEECCCEEEEEEEEECCCCCCHHHEECCEEEEEEEECCCEECCCCCEECCCCEEECC YNVTSDVVSTRAFSSADEPAKQYNGIVSEMSVARLVESQKPELTIKNTATQEVLFQSSDL CCCHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCHH VKYFEEVDAEKYKDRNYSLQEYLDREDKYELVIFVDEKLALIKTVIQVNDWIIQLNDIEL HHHHHHHCHHHHCCCCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCEEEEEEECCC >Mature Secondary Structure MKRILTTIQEKANNILLFTILAGAITSCDSILDYNENCDIEYCVKFKYDYNMEEKDVFAE CHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHH QVRTVTLYAFDDNNNLVFQNTDEGEPLGEETYAMNVDIDLSQYHLVVWAGLNDESFAVPL HCEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEE LYPNQAKIDELRVKTLRKEATRSTTEDEKGQYIVDNSLHSLWHGEVKKGTTTRSGRQQIT ECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCHHHHHH EVSLVKNTNTIRVVVAQVNQSGGPVTRLTQKTFECAIYDNNGYMNYDNTLLEDNLLTYKP EEEEEECCCEEEEEEEEECCCCCCHHHEECCEEEEEEEECCCEECCCCCEECCCCEEECC YNVTSDVVSTRAFSSADEPAKQYNGIVSEMSVARLVESQKPELTIKNTATQEVLFQSSDL CCCHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCHH VKYFEEVDAEKYKDRNYSLQEYLDREDKYELVIFVDEKLALIKTVIQVNDWIIQLNDIEL HHHHHHHCHHHHCCCCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA