| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349635
Identifier: 29349635
GI number: 29349635
Start: 5566091
End: 5567371
Strand: Reverse
Name: 29349635
Synonym: BT_4227
Alternate gene names: NA
Gene position: 5567371-5566091 (Counterclockwise)
Preceding gene: 29349636
Following gene: 29349634
Centisome position: 88.93
GC content: 36.22
Gene sequence:
>1281_bases ATGAAAGTAAAGAATTTATTATTAGCAGGTTTGGCAGTAGCAGCCATGACAGCTTGTAGCAATGACGAAATCATTGACAA TGATGGAATCCAAACAAATGGTGAAAATGCAGCAATGCAAATCAATTTCCAGTTTCCCACAACTAGAGTTGTATCAGATG GTGGCACAAATGCAGGTATAGATATTGAGTATGCAGCTACTGAAATTACAGCAGTTTTAGAGTACACTGAAACAAACAAA AGAATTGTTGTAAAAGGATTAACCTTTGGTCAACAAACTGAAAGTGGTGCTAGAATATACAGCACAGAGAAATTCCAAGT TGAAGCAGGAAACAATGTAAAGGTTTACGCATTTATTAATCCTATTATGGAGATACCAACAACTGGTTTGGAGAATTTAA AGGTTGGAAAACAAAAATTACCAAGTGAAGGTTTGGATTATATAGCTGAAACAATAGCTAAATCTGGTAATTTTATGATG AGCAATGTTAATGGAGAACCTACTGTAATAAAAGCAATTGTAGGTGGAACAGATACCAATACAGCAAACATTAGCGTTGA ACGAATCAGTGCAAAATTAACAGAAGAGACAAAGCGCTCTATAGACAACAAATATGAATTAACAACTCCCACTTTCGTAG GACCAAAGGTGTATGTACAAATTTTGAGCCATACATACACTAATCTAGCTGACGATTCTTATGTACTTGGTGGTAGAAAT GCAGCATGGTCGTCATTCTTACACCCATATAAAACAGGTGAAGTAAGTGAGACTGATTACAGATGGTTGAATGCAACAGG AACAACATACGTACTCGAAAATTTAGGTAGTGAATGGAATACAGCAACTAGCACCAGCGTTCTTTATCAAGGACAAGTTT TCTTCGAAAATGACGGAAATCAAGAAATAGCAGGAACATTCTACAGCAGACCTAAATTACAAAGTGATGGTGAAACATGG AAAGTTCAAATTTACAAGAATTGGGAAGAATTATGTGCAGATGTTGATCTTACTGGTATTGGAGAAAATGACGACGTAGC TTTGGCTAACAGAAGTATCATGAGATATGCAGGAGGAAAATGCTATTATCAAGCACCTATCGAGCATTTTGGTGTTGGAG CTAATATCGCTCGCAATAACTGGTACCAACTAAAAGTTACTTCTATTGCTGATTTAGGTTATCCGAAACCTGTACCTCCA ACTCCTGAAAATGAAACGAAATTAATGATGAGTGTTACTATAGCTCCTTGGACTATCCATATCAATAATGTTGGTCTTTA A
Upstream 100 bases:
>100_bases AAAAAAAAGAAAAAACAATTAGCGTATTATACATACATAGTATAATATGCAAACCCTAAAAAAAAGAATTATAGCATCAC ACATTAAAATCAAAACTAAA
Downstream 100 bases:
>100_bases TCAACTATAATAAATTAATTTAGGGAGAAGTCTCTTCTCCCTAAATTATACTCCGAAAGAAGAGAGTATCACATTCAAAC AAAACATCCGCTCTTTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MKVKNLLLAGLAVAAMTACSNDEIIDNDGIQTNGENAAMQINFQFPTTRVVSDGGTNAGIDIEYAATEITAVLEYTETNK RIVVKGLTFGQQTESGARIYSTEKFQVEAGNNVKVYAFINPIMEIPTTGLENLKVGKQKLPSEGLDYIAETIAKSGNFMM SNVNGEPTVIKAIVGGTDTNTANISVERISAKLTEETKRSIDNKYELTTPTFVGPKVYVQILSHTYTNLADDSYVLGGRN AAWSSFLHPYKTGEVSETDYRWLNATGTTYVLENLGSEWNTATSTSVLYQGQVFFENDGNQEIAGTFYSRPKLQSDGETW KVQIYKNWEELCADVDLTGIGENDDVALANRSIMRYAGGKCYYQAPIEHFGVGANIARNNWYQLKVTSIADLGYPKPVPP TPENETKLMMSVTIAPWTIHINNVGL
Sequences:
>Translated_426_residues MKVKNLLLAGLAVAAMTACSNDEIIDNDGIQTNGENAAMQINFQFPTTRVVSDGGTNAGIDIEYAATEITAVLEYTETNK RIVVKGLTFGQQTESGARIYSTEKFQVEAGNNVKVYAFINPIMEIPTTGLENLKVGKQKLPSEGLDYIAETIAKSGNFMM SNVNGEPTVIKAIVGGTDTNTANISVERISAKLTEETKRSIDNKYELTTPTFVGPKVYVQILSHTYTNLADDSYVLGGRN AAWSSFLHPYKTGEVSETDYRWLNATGTTYVLENLGSEWNTATSTSVLYQGQVFFENDGNQEIAGTFYSRPKLQSDGETW KVQIYKNWEELCADVDLTGIGENDDVALANRSIMRYAGGKCYYQAPIEHFGVGANIARNNWYQLKVTSIADLGYPKPVPP TPENETKLMMSVTIAPWTIHINNVGL >Mature_426_residues MKVKNLLLAGLAVAAMTACSNDEIIDNDGIQTNGENAAMQINFQFPTTRVVSDGGTNAGIDIEYAATEITAVLEYTETNK RIVVKGLTFGQQTESGARIYSTEKFQVEAGNNVKVYAFINPIMEIPTTGLENLKVGKQKLPSEGLDYIAETIAKSGNFMM SNVNGEPTVIKAIVGGTDTNTANISVERISAKLTEETKRSIDNKYELTTPTFVGPKVYVQILSHTYTNLADDSYVLGGRN AAWSSFLHPYKTGEVSETDYRWLNATGTTYVLENLGSEWNTATSTSVLYQGQVFFENDGNQEIAGTFYSRPKLQSDGETW KVQIYKNWEELCADVDLTGIGENDDVALANRSIMRYAGGKCYYQAPIEHFGVGANIARNNWYQLKVTSIADLGYPKPVPP TPENETKLMMSVTIAPWTIHINNVGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46785; Mature: 46785
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVKNLLLAGLAVAAMTACSNDEIIDNDGIQTNGENAAMQINFQFPTTRVVSDGGTNAGI CCHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCEEEEEEEECCCEEEEECCCCCCCE DIEYAATEITAVLEYTETNKRIVVKGLTFGQQTESGARIYSTEKFQVEAGNNVKVYAFIN EEEEEHHEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEC PIMEIPTTGLENLKVGKQKLPSEGLDYIAETIAKSGNFMMSNVNGEPTVIKAIVGGTDTN CHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCC TANISVERISAKLTEETKRSIDNKYELTTPTFVGPKVYVQILSHTYTNLADDSYVLGGRN CEEEEEEHHHHHHHHHHHHHCCCCEEECCCCEECHHHHHHHHHHHHHCCCCCCEEECCCC AAWSSFLHPYKTGEVSETDYRWLNATGTTYVLENLGSEWNTATSTSVLYQGQVFFENDGN HHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEEEEEEEECCCC QEIAGTFYSRPKLQSDGETWKVQIYKNWEELCADVDLTGIGENDDVALANRSIMRYAGGK CEEEEEEECCCCCCCCCCEEEEEEEECHHHHHCCCCEECCCCCCCEEECCCHHHHHCCCE CYYQAPIEHFGVGANIARNNWYQLKVTSIADLGYPKPVPPTPENETKLMMSVTIAPWTIH EEEECCHHHCCCCCEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE INNVGL EECCCC >Mature Secondary Structure MKVKNLLLAGLAVAAMTACSNDEIIDNDGIQTNGENAAMQINFQFPTTRVVSDGGTNAGI CCHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCEEEEEEEECCCEEEEECCCCCCCE DIEYAATEITAVLEYTETNKRIVVKGLTFGQQTESGARIYSTEKFQVEAGNNVKVYAFIN EEEEEHHEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEC PIMEIPTTGLENLKVGKQKLPSEGLDYIAETIAKSGNFMMSNVNGEPTVIKAIVGGTDTN CHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCC TANISVERISAKLTEETKRSIDNKYELTTPTFVGPKVYVQILSHTYTNLADDSYVLGGRN CEEEEEEHHHHHHHHHHHHHCCCCEEECCCCEECHHHHHHHHHHHHHCCCCCCEEECCCC AAWSSFLHPYKTGEVSETDYRWLNATGTTYVLENLGSEWNTATSTSVLYQGQVFFENDGN HHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEEEEEEEECCCC QEIAGTFYSRPKLQSDGETWKVQIYKNWEELCADVDLTGIGENDDVALANRSIMRYAGGK CEEEEEEECCCCCCCCCCEEEEEEEECHHHHHCCCCEECCCCCCCEEECCCHHHHHCCCE CYYQAPIEHFGVGANIARNNWYQLKVTSIADLGYPKPVPPTPENETKLMMSVTIAPWTIH EEEECCHHHCCCCCEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE INNVGL EECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA