Click here to switch to the map view.

The map label for this gene is pehX [H]

Identifier: 29349595

GI number: 29349595

Start: 5521399

End: 5523015

Strand: Reverse

Name: pehX [H]

Synonym: BT_4187

Alternate gene names: 29349595

Gene position: 5523015-5521399 (Counterclockwise)

Preceding gene: 29349599

Following gene: 29349594

Centisome position: 88.22

GC content: 44.96

Gene sequence:

>1617_bases
ATGAACACAATGACAAGAAGACTCCTCTGGATGGTCGTATGTTGTTTGCCGTTTGTCTCGGGATGCAAACAAAGTGAGTG
CGCAATAAGCGAAAACGCAATAGATGACACCATTTACCAGAATTTACCTTTCGAAATGCCGAAAGTACAGCAGCCGGTTT
TTCCTGCTTATGAGGTAAATATCTCTAAATTCGGAGCCAAGGGGGATGGGATGACCCTGAATACGAAAGCAATCAACGAT
GCTATAAAAGAAGTAAACCAACGTGGCGGAGGTAAAGTTATCATCCCAGAAGGCACTTGGCTGACCGGACCTATCGAACT
GCTCAGCAACGTGAATCTTTATACAGAACGCAATGCCCTGATACTCTTCACCGGTGACTTTGAAGCATATCCTATCATCC
CCACTTCTTTCGAAGGATTGGAAACACGCCGCTGTCAATCACCGATTTCTGCTCGTAATGCAGAGAATATCGCTATCACA
GGATATGGAATATTTGACGGAAACGGAGACTGCTGGCGCCCGGTGAAGAAGGAAAAACTAACAGCTTCGCAATGGAATAA
ACTGGTAAAATCGGGTGGTGTACTCGATGAACAGGAAAGAATATGGTATCCTACCGCCGGTTCGCTGAAAGGTGCAATGG
CCTGCAAAGACTTCAATGTGCCCGAAGGCATCAACACGGACGAAGAATGGAATGAAATCCGTGCATGGTTGCGCCCCGTA
TTACTGAATTTCGTGAAAAGCAAGAGGATTTTGCTGGAAGGAGTTACTTTCAAGAACTCACCGAGCTGGTGTCTGCATCC
GTTGTCATGTGAAGACTTTACAGTGAATAATATTCAGGTAATCAATCCCTGGTATTCTCAGAACGGAGATGCACTCGATC
TGGAATCTTGCAAGAATGCACTGATCCTGAATAGTGTATTCGATGCGGGTGACGATGCCATCTGTATCAAATCGGGCAAA
GATGAGAACGGCCGCCGCCGCGGAGAACCTTGCCAGAATGTAATCGTAAAGAATAATACGGTATTACATGGGCATGGCGG
ATTTGTAGTAGGCAGTGAAATGTCCGGTGGTGTGAAGAATATCTATGTAGAAGATTGTACATTCCTGGGAACAGATGTAG
GTCTGCGCTTCAAAAGTACCCGCGGACGTGGCGGTGTTGTAGAAAACATCTATATCAATAACATCAATATGATCAATATA
CCGAACGAACCGTTACTTTTCGACCTGTTCTATGGTGGCAAAGGAGCCGGAGAAGAATCGGAAGAAGATCTGCTGAGCCG
TATGAAGACGGCGATTCCTCCTGTAACCGAAGAGACTCCTGCGTTCCGTGATATTCATATATCAAATGTCATTTGCAGAG
GTTCGGGACGTGCGATGTTCTTCAACGGACTTCCGGAAATGCCTATCCGTAACGTAACTGTGAAGAATGTTGTGATGACG
GAAGCTACTGACGGAGTCGTTATCAGTCAGGTAGACGGTGTCACACTCGAAAATATTTATGTAGAATCAACCAAAGGAAA
GAATATACTGAATGTCAAAAGCGCCAAGAATCTGAAAGTCGATGGAGAGACTTATGAAGAGATTGACGCCAAAGGACAGA
TATTGAATTTCAAATAA

Upstream 100 bases:

>100_bases
CGCCTGCGGAGGGAGATAAGAGTTATGAGAAGCCATCTTAGAAATCGAAAGAGAATACCAGAAAAACAATAAATGTATAA
CCCTATAGAAAAGTTACTAA

Downstream 100 bases:

>100_bases
GAGATTCCACCACAGAAAACCACAAAATCATTATATAGAGTAAAAAGCTCAAATAGCAGACTAATTTATCTTCCAAAGAT
AAGCCGGTCTGCTATTTTTT

Product: exo-poly-alpha-D-galacturonosidase

Products: NA

Alternate protein names: Exo-PG [H]

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MNTMTRRLLWMVVCCLPFVSGCKQSECAISENAIDDTIYQNLPFEMPKVQQPVFPAYEVNISKFGAKGDGMTLNTKAIND
AIKEVNQRGGGKVIIPEGTWLTGPIELLSNVNLYTERNALILFTGDFEAYPIIPTSFEGLETRRCQSPISARNAENIAIT
GYGIFDGNGDCWRPVKKEKLTASQWNKLVKSGGVLDEQERIWYPTAGSLKGAMACKDFNVPEGINTDEEWNEIRAWLRPV
LLNFVKSKRILLEGVTFKNSPSWCLHPLSCEDFTVNNIQVINPWYSQNGDALDLESCKNALILNSVFDAGDDAICIKSGK
DENGRRRGEPCQNVIVKNNTVLHGHGGFVVGSEMSGGVKNIYVEDCTFLGTDVGLRFKSTRGRGGVVENIYINNINMINI
PNEPLLFDLFYGGKGAGEESEEDLLSRMKTAIPPVTEETPAFRDIHISNVICRGSGRAMFFNGLPEMPIRNVTVKNVVMT
EATDGVVISQVDGVTLENIYVESTKGKNILNVKSAKNLKVDGETYEEIDAKGQILNFK

Sequences:

>Translated_538_residues
MNTMTRRLLWMVVCCLPFVSGCKQSECAISENAIDDTIYQNLPFEMPKVQQPVFPAYEVNISKFGAKGDGMTLNTKAIND
AIKEVNQRGGGKVIIPEGTWLTGPIELLSNVNLYTERNALILFTGDFEAYPIIPTSFEGLETRRCQSPISARNAENIAIT
GYGIFDGNGDCWRPVKKEKLTASQWNKLVKSGGVLDEQERIWYPTAGSLKGAMACKDFNVPEGINTDEEWNEIRAWLRPV
LLNFVKSKRILLEGVTFKNSPSWCLHPLSCEDFTVNNIQVINPWYSQNGDALDLESCKNALILNSVFDAGDDAICIKSGK
DENGRRRGEPCQNVIVKNNTVLHGHGGFVVGSEMSGGVKNIYVEDCTFLGTDVGLRFKSTRGRGGVVENIYINNINMINI
PNEPLLFDLFYGGKGAGEESEEDLLSRMKTAIPPVTEETPAFRDIHISNVICRGSGRAMFFNGLPEMPIRNVTVKNVVMT
EATDGVVISQVDGVTLENIYVESTKGKNILNVKSAKNLKVDGETYEEIDAKGQILNFK
>Mature_538_residues
MNTMTRRLLWMVVCCLPFVSGCKQSECAISENAIDDTIYQNLPFEMPKVQQPVFPAYEVNISKFGAKGDGMTLNTKAIND
AIKEVNQRGGGKVIIPEGTWLTGPIELLSNVNLYTERNALILFTGDFEAYPIIPTSFEGLETRRCQSPISARNAENIAIT
GYGIFDGNGDCWRPVKKEKLTASQWNKLVKSGGVLDEQERIWYPTAGSLKGAMACKDFNVPEGINTDEEWNEIRAWLRPV
LLNFVKSKRILLEGVTFKNSPSWCLHPLSCEDFTVNNIQVINPWYSQNGDALDLESCKNALILNSVFDAGDDAICIKSGK
DENGRRRGEPCQNVIVKNNTVLHGHGGFVVGSEMSGGVKNIYVEDCTFLGTDVGLRFKSTRGRGGVVENIYINNINMINI
PNEPLLFDLFYGGKGAGEESEEDLLSRMKTAIPPVTEETPAFRDIHISNVICRGSGRAMFFNGLPEMPIRNVTVKNVVMT
EATDGVVISQVDGVTLENIYVESTKGKNILNVKSAKNLKVDGETYEEIDAKGQILNFK

Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR000743
- InterPro:   IPR013783
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.82 [H]

Molecular weight: Translated: 59510; Mature: 59510

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00502 POLYGALACTURONASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTMTRRLLWMVVCCLPFVSGCKQSECAISENAIDDTIYQNLPFEMPKVQQPVFPAYEVN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEE
ISKFGAKGDGMTLNTKAINDAIKEVNQRGGGKVIIPEGTWLTGPIELLSNVNLYTERNAL
HHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHHHCCCCEEEECCEE
ILFTGDFEAYPIIPTSFEGLETRRCQSPISARNAENIAITGYGIFDGNGDCWRPVKKEKL
EEEECCCCEECCCCCCCCCCHHHHHCCCHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHC
TASQWNKLVKSGGVLDEQERIWYPTAGSLKGAMACKDFNVPEGINTDEEWNEIRAWLRPV
CHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
LLNFVKSKRILLEGVTFKNSPSWCLHPLSCEDFTVNNIQVINPWYSQNGDALDLESCKNA
HHHHHHCCEEEEEEEEECCCCCCEEECCCCCCEEECCEEEECCHHCCCCCEEEHHHHCCE
LILNSVFDAGDDAICIKSGKDENGRRRGEPCQNVIVKNNTVLHGHGGFVVGSEMSGGVKN
EEEHHHHCCCCCEEEEECCCCCCCCCCCCHHHCEEEECCEEEECCCCEEEECCCCCCEEE
IYVEDCTFLGTDVGLRFKSTRGRGGVVENIYINNINMINIPNEPLLFDLFYGGKGAGEES
EEEECCEEEECCCCEEEECCCCCCCEEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCH
EEDLLSRMKTAIPPVTEETPAFRDIHISNVICRGSGRAMFFNGLPEMPIRNVTVKNVVMT
HHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCCCCCEEEEEEEEE
EATDGVVISQVDGVTLENIYVESTKGKNILNVKSAKNLKVDGETYEEIDAKGQILNFK
CCCCCEEEEECCCEEEEEEEEECCCCCEEEEECCCCCEEECCCHHHHHCCCCCEEECC
>Mature Secondary Structure
MNTMTRRLLWMVVCCLPFVSGCKQSECAISENAIDDTIYQNLPFEMPKVQQPVFPAYEVN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEE
ISKFGAKGDGMTLNTKAINDAIKEVNQRGGGKVIIPEGTWLTGPIELLSNVNLYTERNAL
HHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHHHCCCCEEEECCEE
ILFTGDFEAYPIIPTSFEGLETRRCQSPISARNAENIAITGYGIFDGNGDCWRPVKKEKL
EEEECCCCEECCCCCCCCCCHHHHHCCCHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHC
TASQWNKLVKSGGVLDEQERIWYPTAGSLKGAMACKDFNVPEGINTDEEWNEIRAWLRPV
CHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
LLNFVKSKRILLEGVTFKNSPSWCLHPLSCEDFTVNNIQVINPWYSQNGDALDLESCKNA
HHHHHHCCEEEEEEEEECCCCCCEEECCCCCCEEECCEEEECCHHCCCCCEEEHHHHCCE
LILNSVFDAGDDAICIKSGKDENGRRRGEPCQNVIVKNNTVLHGHGGFVVGSEMSGGVKN
EEEHHHHCCCCCEEEEECCCCCCCCCCCCHHHCEEEECCEEEECCCCEEEECCCCCCEEE
IYVEDCTFLGTDVGLRFKSTRGRGGVVENIYINNINMINIPNEPLLFDLFYGGKGAGEES
EEEECCEEEECCCCEEEECCCCCCCEEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCH
EEDLLSRMKTAIPPVTEETPAFRDIHISNVICRGSGRAMFFNGLPEMPIRNVTVKNVVMT
HHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCCCCCEEEEEEEEE
EATDGVVISQVDGVTLENIYVESTKGKNILNVKSAKNLKVDGETYEEIDAKGQILNFK
CCCCCEEEEECCCEEEEEEEEECCCCCEEEEECCCCCEEECCCHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2168372; 1409594 [H]