Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29349594
Identifier: 29349594
GI number: 29349594
Start: 5520015
End: 5521247
Strand: Reverse
Name: 29349594
Synonym: BT_4186
Alternate gene names: NA
Gene position: 5521247-5520015 (Counterclockwise)
Preceding gene: 29349595
Following gene: 29349593
Centisome position: 88.19
GC content: 45.9
Gene sequence:
>1233_bases ATGAAGAAGAATATTTTTATCATCACACTCCTTGTCGGGTGCTGCTCTCTGTCCGCCTGGGCTCAAAAACAGGAGAAAAC CATTACTGTAGAAGTAAACAATAACTGGAACCGTGCCAAGACGGATGAACCGGTAGTAATCAACTTGCGTGACTTGCATA CCGGATTTAAAGTAAAGTCTGCCGTAGTAATGGAAGGAAGCACTGAAATTCCTTCTCAGCTGGACGACCTGAACAGAGAC CGTAAGATGGATGAACTGGCATTCGTTACCAGCCTCCCTGCTCACGGAAGAAAAACATTTCAGGTAACCCTGTCTTCTGA AAAGAGTACGAAAACCTATCCGGCACGGGTTTATGCGGAAATGTTCATTGCTGACCCGAGAAAAGGAAAGCATCAGTCAG TACAGGCAATCACTGTCCCTGGTACAAGTAATATATATAGTATGGTCCGTCCTCATGGTCCTGTACTGGAATCGGAACTG GTAGGCTATCGTCTTTACTTTAACGAAAAACAGACACCGGATATCTACGGTAAGTTCAATAAAGGACTGGAAATCAAAGA ATCTCAGTTCTACCCTACTGACGAACAGTTAGCAAGAGGATTCGGTGACGATGTCCTCCGGGTATTCGACAGTTGCGGTC CGGGTGCTTTCAAAGGATGGGACGGAAAGAAAGCAACTCATATCACTCCGGTGGCTACCCGTACGGAACGTATCATCTCT TACGGTCCGGTGCGTGTCATCGCAGAAATCGAAGTGACAGGCTGGAAATATCAAAATGCGGAATTGGACATGATGACCCG TTACACACTCTATGCCGGACACCGTGATCTTCGTATCGAGGCATTCTTCGACGAGCCGATTAAGAACGAAGTGTTCTGTA CAGGCGTTCAGGATATTGTCGGTACCGCAGAATCTTACTCGGATCACAAAGGGCTTGTCGGCAGTTGGGGAACAGACTGG CCGGTAAACGATACCGTGAAATATGCCAAAGAAACAGTAGGTCTTGGGACCTGCATTCCCCAACGATATGTGAAATCGGA AGAGAAAGACAAAGACAACTACCTCTACACCATCACATCTCCGGGAAGCAAATACTTACAGTATCACACCACTTTCACTT CCATGAAAGAAACTTTCGGCTATAAGACACCGGAAGCATGGTTCGCTTATCTCCGCGAATGGAAAGAAGAATTGGTACAT CCGGTAACGGTCAAAATAAAAGATATTCATTAA
Upstream 100 bases:
>100_bases AATAGCAGACTAATTTATCTTCCAAAGATAAGCCGGTCTGCTATTTTTTCAATTACTTTTGCAGAAAGAAATACGACGTA TAATATCATGCCTTAAAATC
Downstream 100 bases:
>100_bases ACAAAGCATACAAATACAGTTAAACAATCAAATACTGGAGTATTTACCAGTTTTTATACCGACTCTGCACAATTATTACT CCTTTGTGCGGAGTCTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MKKNIFIITLLVGCCSLSAWAQKQEKTITVEVNNNWNRAKTDEPVVINLRDLHTGFKVKSAVVMEGSTEIPSQLDDLNRD RKMDELAFVTSLPAHGRKTFQVTLSSEKSTKTYPARVYAEMFIADPRKGKHQSVQAITVPGTSNIYSMVRPHGPVLESEL VGYRLYFNEKQTPDIYGKFNKGLEIKESQFYPTDEQLARGFGDDVLRVFDSCGPGAFKGWDGKKATHITPVATRTERIIS YGPVRVIAEIEVTGWKYQNAELDMMTRYTLYAGHRDLRIEAFFDEPIKNEVFCTGVQDIVGTAESYSDHKGLVGSWGTDW PVNDTVKYAKETVGLGTCIPQRYVKSEEKDKDNYLYTITSPGSKYLQYHTTFTSMKETFGYKTPEAWFAYLREWKEELVH PVTVKIKDIH
Sequences:
>Translated_410_residues MKKNIFIITLLVGCCSLSAWAQKQEKTITVEVNNNWNRAKTDEPVVINLRDLHTGFKVKSAVVMEGSTEIPSQLDDLNRD RKMDELAFVTSLPAHGRKTFQVTLSSEKSTKTYPARVYAEMFIADPRKGKHQSVQAITVPGTSNIYSMVRPHGPVLESEL VGYRLYFNEKQTPDIYGKFNKGLEIKESQFYPTDEQLARGFGDDVLRVFDSCGPGAFKGWDGKKATHITPVATRTERIIS YGPVRVIAEIEVTGWKYQNAELDMMTRYTLYAGHRDLRIEAFFDEPIKNEVFCTGVQDIVGTAESYSDHKGLVGSWGTDW PVNDTVKYAKETVGLGTCIPQRYVKSEEKDKDNYLYTITSPGSKYLQYHTTFTSMKETFGYKTPEAWFAYLREWKEELVH PVTVKIKDIH >Mature_410_residues MKKNIFIITLLVGCCSLSAWAQKQEKTITVEVNNNWNRAKTDEPVVINLRDLHTGFKVKSAVVMEGSTEIPSQLDDLNRD RKMDELAFVTSLPAHGRKTFQVTLSSEKSTKTYPARVYAEMFIADPRKGKHQSVQAITVPGTSNIYSMVRPHGPVLESEL VGYRLYFNEKQTPDIYGKFNKGLEIKESQFYPTDEQLARGFGDDVLRVFDSCGPGAFKGWDGKKATHITPVATRTERIIS YGPVRVIAEIEVTGWKYQNAELDMMTRYTLYAGHRDLRIEAFFDEPIKNEVFCTGVQDIVGTAESYSDHKGLVGSWGTDW PVNDTVKYAKETVGLGTCIPQRYVKSEEKDKDNYLYTITSPGSKYLQYHTTFTSMKETFGYKTPEAWFAYLREWKEELVH PVTVKIKDIH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46671; Mature: 46671
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNIFIITLLVGCCSLSAWAQKQEKTITVEVNNNWNRAKTDEPVVINLRDLHTGFKVKS CCCCEEEHEEHHHHHCHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEE AVVMEGSTEIPSQLDDLNRDRKMDELAFVTSLPAHGRKTFQVTLSSEKSTKTYPARVYAE EEEECCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHEEE MFIADPRKGKHQSVQAITVPGTSNIYSMVRPHGPVLESELVGYRLYFNEKQTPDIYGKFN HHCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCHHHHEEEEEEECCCCCCCHHHCCC KGLEIKESQFYPTDEQLARGFGDDVLRVFDSCGPGAFKGWDGKKATHITPVATRTERIIS CCCEEECCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHC YGPVRVIAEIEVTGWKYQNAELDMMTRYTLYAGHRDLRIEAFFDEPIKNEVFCTGVQDIV CCCEEEEEEEEEECEEECCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCEEEECHHHHH GTAESYSDHKGLVGSWGTDWPVNDTVKYAKETVGLGTCIPQRYVKSEEKDKDNYLYTITS CCHHCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEEEC PGSKYLQYHTTFTSMKETFGYKTPEAWFAYLREWKEELVHPVTVKIKDIH CCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC >Mature Secondary Structure MKKNIFIITLLVGCCSLSAWAQKQEKTITVEVNNNWNRAKTDEPVVINLRDLHTGFKVKS CCCCEEEHEEHHHHHCHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEE AVVMEGSTEIPSQLDDLNRDRKMDELAFVTSLPAHGRKTFQVTLSSEKSTKTYPARVYAE EEEECCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHEEE MFIADPRKGKHQSVQAITVPGTSNIYSMVRPHGPVLESELVGYRLYFNEKQTPDIYGKFN HHCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCHHHHEEEEEEECCCCCCCHHHCCC KGLEIKESQFYPTDEQLARGFGDDVLRVFDSCGPGAFKGWDGKKATHITPVATRTERIIS CCCEEECCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHC YGPVRVIAEIEVTGWKYQNAELDMMTRYTLYAGHRDLRIEAFFDEPIKNEVFCTGVQDIV CCCEEEEEEEEEECEEECCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCEEEECHHHHH GTAESYSDHKGLVGSWGTDWPVNDTVKYAKETVGLGTCIPQRYVKSEEKDKDNYLYTITS CCHHCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEEEC PGSKYLQYHTTFTSMKETFGYKTPEAWFAYLREWKEELVHPVTVKIKDIH CCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA