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The map label for this gene is yagH [C]

Identifier: 29349593

GI number: 29349593

Start: 5518174

End: 5519850

Strand: Reverse

Name: yagH [C]

Synonym: BT_4185

Alternate gene names: 29349593

Gene position: 5519850-5518174 (Counterclockwise)

Preceding gene: 29349594

Following gene: 29349592

Centisome position: 88.17

GC content: 47.17

Gene sequence:

>1677_bases
ATGAAACGATTGACACAGACTTTAGCTTTTTGCCTGCTAACTGTTTTCACTGCGGTAGCACAGAAAAACTATGTATCCGA
AGTATGGGTTTCCGATCTCGGAAATGGTAAATACAAGAATCCGGTGCTCTATGCCGATTATTCCGATCCGGACGCTTGCC
GCGTAGGAGATGATTTCTATATGACTTCTTCCAGCTTCAACTGTCTGCCGGGATTGCAGATTCTACATTCCAAGGATTTA
GTGAACTGGACGATTATCGGAGCTGCTGTTCCCTATGCCCTCACCCCTATTGAAACACCGGAACGTCCGGAACACGGCAA
CCGTGTCTGGGCACCCAGTATCCGCCACCATAACGGAGAGTTTTATATCTTCTGGGGAGACCCGGACCAAGGCGCTTTCA
TGGTAAAAGCCAAAGACCCGCAAGGTCCGTGGACGGAACCTGTTCTGGTTAAACCGGGAAAAGGAATCATCGATACCTGC
CCGCTTTGGGATGAAGACGGAAAAGTATATCTGGTACACGCCTATGCAGGAAGCCGCGCCGGACTGAAAAGTGTAATCAC
CATCTGTGAATTGAATAAGGAAGCGACCAAAGCCATCACCCCCTCACGCATTATCTTCGACGGTCACGAAGCACACCAGA
CGTGTGAAGGCCCGAAGTTTTATAAAAGGAACGGCTATTATTATATCTTCCATCCGGCAGGCGGTGTGCCAACCGGTTGG
CAGGTAGTACTCCGTTCTAAAAATGCGTATGGTCCTTATGAATGGAGAACTGTACTGGCGCAGGGTGATTCTCCCGTCAA
TGGACCTCACCAGGGAGCTTGGGTAGACACTCCTTCCGGAGAAGACTGGTTCTTCCACTTTCAGGATGTAGGCGCTTATG
GTCGCCTTGTTCACTTGCAACCGATGAAGTGGGTGAATGACTGGCCTGTAATCGGTATCGACAAAGATGGTGACGGTTGC
GGCGAACCGGTAATGACCTACAAAAAGCCGAATGTAGGAAAGATATATCCCATCTGTACACCGCAAGAAAGCGACGAATT
CGACGGATATATACTCTCTCCGCAATGGCAGTGGCACGCTAATATCAATGAGAAATGGGCATATTATGCCGGAGACAAAA
GTTATGTCAGACTATACTCTTATCCGGTAGTAGCGGATTATAAGAATTTGTGGGATGTAGCTAATCTGTTGTTGCAAAAA
ACTCCTTCGGACAATTTCACCACCACAATGAAACTGACCTTCATGCCTAATCCCAAACTGAAAGGTGAACGTACAGGTTT
GGTAGTAATGGGCAGGGATTATGCAGGATTGATTCTGGAAAATACGGACAAAGGTCTTGTGCTGTCTCAAATTGAATGTA
AAAAAGCAGATAAAGGAGAAGCGGAACAGGTAAACTCTTCTGTCGGTCTTACCCAAAACACGGTATACCTAAAGGTACGT
TTCAGTTGCGACGGCAAGAAAATTAAAGCCAGTGAAGGAGGTAACGACCTCATTGTGATATGCAACTTCAGTTATAGCCT
TGACGGAAAGAAGTTCTTGCCATTAGGCAACCCTTTTCAGGCAAGGGAGGGACAATGGATTGGCGCCAAAGTCGGCATGT
TCTGTACCCGTCCGGCTATTGTTACCAATGATGGAGGATGGACAGATGTAGACTGGTTCCGAATTACAAGGAAATGA

Upstream 100 bases:

>100_bases
CTGCACAATTATTACTCCTTTGTGCGGAGTCTTTTTTTTACCTTTGCCCCATTGAGAGACTTCAACTGAATCTTTAATAT
CAAACTATTATACCTATATC

Downstream 100 bases:

>100_bases
TTCGTTTTTTATTCCTATCTTTGTAAGCAGAAAGAAAGGAAAACAGGATTAACATAAAAAAACAAGAAGTTCAATGAAGA
AACTAGTCATTTTCGATTTG

Product: xylosidase/arabinosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MKRLTQTLAFCLLTVFTAVAQKNYVSEVWVSDLGNGKYKNPVLYADYSDPDACRVGDDFYMTSSSFNCLPGLQILHSKDL
VNWTIIGAAVPYALTPIETPERPEHGNRVWAPSIRHHNGEFYIFWGDPDQGAFMVKAKDPQGPWTEPVLVKPGKGIIDTC
PLWDEDGKVYLVHAYAGSRAGLKSVITICELNKEATKAITPSRIIFDGHEAHQTCEGPKFYKRNGYYYIFHPAGGVPTGW
QVVLRSKNAYGPYEWRTVLAQGDSPVNGPHQGAWVDTPSGEDWFFHFQDVGAYGRLVHLQPMKWVNDWPVIGIDKDGDGC
GEPVMTYKKPNVGKIYPICTPQESDEFDGYILSPQWQWHANINEKWAYYAGDKSYVRLYSYPVVADYKNLWDVANLLLQK
TPSDNFTTTMKLTFMPNPKLKGERTGLVVMGRDYAGLILENTDKGLVLSQIECKKADKGEAEQVNSSVGLTQNTVYLKVR
FSCDGKKIKASEGGNDLIVICNFSYSLDGKKFLPLGNPFQAREGQWIGAKVGMFCTRPAIVTNDGGWTDVDWFRITRK

Sequences:

>Translated_558_residues
MKRLTQTLAFCLLTVFTAVAQKNYVSEVWVSDLGNGKYKNPVLYADYSDPDACRVGDDFYMTSSSFNCLPGLQILHSKDL
VNWTIIGAAVPYALTPIETPERPEHGNRVWAPSIRHHNGEFYIFWGDPDQGAFMVKAKDPQGPWTEPVLVKPGKGIIDTC
PLWDEDGKVYLVHAYAGSRAGLKSVITICELNKEATKAITPSRIIFDGHEAHQTCEGPKFYKRNGYYYIFHPAGGVPTGW
QVVLRSKNAYGPYEWRTVLAQGDSPVNGPHQGAWVDTPSGEDWFFHFQDVGAYGRLVHLQPMKWVNDWPVIGIDKDGDGC
GEPVMTYKKPNVGKIYPICTPQESDEFDGYILSPQWQWHANINEKWAYYAGDKSYVRLYSYPVVADYKNLWDVANLLLQK
TPSDNFTTTMKLTFMPNPKLKGERTGLVVMGRDYAGLILENTDKGLVLSQIECKKADKGEAEQVNSSVGLTQNTVYLKVR
FSCDGKKIKASEGGNDLIVICNFSYSLDGKKFLPLGNPFQAREGQWIGAKVGMFCTRPAIVTNDGGWTDVDWFRITRK
>Mature_558_residues
MKRLTQTLAFCLLTVFTAVAQKNYVSEVWVSDLGNGKYKNPVLYADYSDPDACRVGDDFYMTSSSFNCLPGLQILHSKDL
VNWTIIGAAVPYALTPIETPERPEHGNRVWAPSIRHHNGEFYIFWGDPDQGAFMVKAKDPQGPWTEPVLVKPGKGIIDTC
PLWDEDGKVYLVHAYAGSRAGLKSVITICELNKEATKAITPSRIIFDGHEAHQTCEGPKFYKRNGYYYIFHPAGGVPTGW
QVVLRSKNAYGPYEWRTVLAQGDSPVNGPHQGAWVDTPSGEDWFFHFQDVGAYGRLVHLQPMKWVNDWPVIGIDKDGDGC
GEPVMTYKKPNVGKIYPICTPQESDEFDGYILSPQWQWHANINEKWAYYAGDKSYVRLYSYPVVADYKNLWDVANLLLQK
TPSDNFTTTMKLTFMPNPKLKGERTGLVVMGRDYAGLILENTDKGLVLSQIECKKADKGEAEQVNSSVGLTQNTVYLKVR
FSCDGKKIKASEGGNDLIVICNFSYSLDGKKFLPLGNPFQAREGQWIGAKVGMFCTRPAIVTNDGGWTDVDWFRITRK

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=569, Percent_Identity=23.9015817223199, Blast_Score=120, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 62632; Mature: 62632

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLTQTLAFCLLTVFTAVAQKNYVSEVWVSDLGNGKYKNPVLYADYSDPDACRVGDDFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCEE
MTSSSFNCLPGLQILHSKDLVNWTIIGAAVPYALTPIETPERPEHGNRVWAPSIRHHNGE
EECCCCCCCCCCEEEECCCCEEEEEEEEECCEEECCCCCCCCCCCCCEEECCCCEECCCE
FYIFWGDPDQGAFMVKAKDPQGPWTEPVLVKPGKGIIDTCPLWDEDGKVYLVHAYAGSRA
EEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCCEECCCCCCCCCCEEEEEEECCCCC
GLKSVITICELNKEATKAITPSRIIFDGHEAHQTCEGPKFYKRNGYYYIFHPAGGVPTGW
CHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHCCCCCCEEECCCEEEEEECCCCCCCCE
QVVLRSKNAYGPYEWRTVLAQGDSPVNGPHQGAWVDTPSGEDWFFHFQDVGAYGRLVHLQ
EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC
PMKWVNDWPVIGIDKDGDGCGEPVMTYKKPNVGKIYPICTPQESDEFDGYILSPQWQWHA
CCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEECCCEEEEC
NINEKWAYYAGDKSYVRLYSYPVVADYKNLWDVANLLLQKTPSDNFTTTMKLTFMPNPKL
CCCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
KGERTGLVVMGRDYAGLILENTDKGLVLSQIECKKADKGEAEQVNSSVGLTQNTVYLKVR
CCCCCCEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEEEEEEE
FSCDGKKIKASEGGNDLIVICNFSYSLDGKKFLPLGNPFQAREGQWIGAKVGMFCTRPAI
EECCCCEEEECCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCEEEEEECEEEECCEE
VTNDGGWTDVDWFRITRK
EECCCCCCCEEEEEEECC
>Mature Secondary Structure
MKRLTQTLAFCLLTVFTAVAQKNYVSEVWVSDLGNGKYKNPVLYADYSDPDACRVGDDFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCEE
MTSSSFNCLPGLQILHSKDLVNWTIIGAAVPYALTPIETPERPEHGNRVWAPSIRHHNGE
EECCCCCCCCCCEEEECCCCEEEEEEEEECCEEECCCCCCCCCCCCCEEECCCCEECCCE
FYIFWGDPDQGAFMVKAKDPQGPWTEPVLVKPGKGIIDTCPLWDEDGKVYLVHAYAGSRA
EEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCCEECCCCCCCCCCEEEEEEECCCCC
GLKSVITICELNKEATKAITPSRIIFDGHEAHQTCEGPKFYKRNGYYYIFHPAGGVPTGW
CHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHCCCCCCEEECCCEEEEEECCCCCCCCE
QVVLRSKNAYGPYEWRTVLAQGDSPVNGPHQGAWVDTPSGEDWFFHFQDVGAYGRLVHLQ
EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC
PMKWVNDWPVIGIDKDGDGCGEPVMTYKKPNVGKIYPICTPQESDEFDGYILSPQWQWHA
CCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEECCCEEEEC
NINEKWAYYAGDKSYVRLYSYPVVADYKNLWDVANLLLQKTPSDNFTTTMKLTFMPNPKL
CCCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
KGERTGLVVMGRDYAGLILENTDKGLVLSQIECKKADKGEAEQVNSSVGLTQNTVYLKVR
CCCCCCEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEEEEEEE
FSCDGKKIKASEGGNDLIVICNFSYSLDGKKFLPLGNPFQAREGQWIGAKVGMFCTRPAI
EECCCCEEEECCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCEEEEEECEEEECCEE
VTNDGGWTDVDWFRITRK
EECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA