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The map label for this gene is xerD [C]

Identifier: 29349429

GI number: 29349429

Start: 5237521

End: 5238732

Strand: Reverse

Name: xerD [C]

Synonym: BT_4021

Alternate gene names: 29349429

Gene position: 5238732-5237521 (Counterclockwise)

Preceding gene: 29349430

Following gene: 29349428

Centisome position: 83.68

GC content: 46.45

Gene sequence:

>1212_bases
ATGCGAAGCACATTTTCACTTTTACCCTACATTAACCGCAGCAAAGTAAAGGCTGACGGTACGACCGCCATACTCTGCCG
CATAACCATTGACGGCAAACAGACTGCCATCAGTACGGGGATTTATTGCCGACCGGAAGAATGGAACAGCAAGAAAAACG
AGATTAAATCCGTAAGGGAAAATAACCGCTTACGAGAATATTTACGACTGACAGAGGAAGCCTACAATGAGATACTGAAA
TCGCAAGGTGTGGTCAGTGCCGAGATTTTGAAGAACCACATATCCTTGAACAACATCCATCCGACCACTCTTCTACAGAT
GGGAGAATGGGAACGTGAGCGGTTGAAGAAGCATTCCGAAGAAATAGACTCGACTTCTTCCTGTCGAAGTTCAATGTATT
ATCAGAAGTACCTGACGGATTTTCTTACGTCCATCGGTAAAAAGGACATTCCCCTTGAAGAAGTGACGGAGGATTTCGGC
AAGTCCTACAAAGCCCACTTGAAGAAATGCAAGAACTTCGGGGCTTCCCAGACCAACCATTGCCTGCGTTGGCTGAACCG
ACTGTTGTACCTTGCAGTAGACAAGGAGATTCTCCGTGTAAATCCCTGTGAGGACTTGGAATATGAGACAAAGCCGGAAG
CAAGGCACAGGTACATCAGCCGTGAGGAGTTCAAGAAGATACTTTCCACACCGATGTATGACAAGCGTATGGAACTGGCA
AGACGGGCTTTCATATTTTCCACCCTGACGGGACTGGCGTATGTGGACATCAAACTTCTTCATCCCCACCATATCGGAAC
AAACGCTGATGGCAGACGGTACATCCGCATCAACCGAAAAAAGACAAAGGTGGAGGCATTCATACCCTTACATCCCATAG
CGGAGCGGATATTGTCGCTGTATAACACGACCGATGACGAGAAGCCCGTGTTTCCTCTTCCCAACCGTGATGCCCTATGG
TTTGAGGTTCACGAGTTGGGAATAACCATAGGGAAAGAGGAAAACTTGACCTATCACCAAAGTCGGCACAGTTTCGGAAC
ATTTTTGATTTCGGCAGATATACCCATTGAGAGTATCGCCAAGATGATGGGACACTCCAATATCAGGACGACACAGGGAT
ATGCACGGATAACCGATGATAAAATTTCCAAAGATATGGACAAACTGATGGAGCGAAGAAAGGAAATATCGTCTGGCGAA
AAGAAGAAATAG

Upstream 100 bases:

>100_bases
CCGTGTCAGCCCGAAGAAACTTTTCGAGGACATGGACAAGTTCATAGAAGCCACCAAAGATTTTCAATTAGTTCTTTAAT
CCTTTAATACAGAAAACTAT

Downstream 100 bases:

>100_bases
CAAATAATCATCATAAAATAAAGGGATTATGAGCAGAGGCATAATAACAATCAGTGAAACGGATGCAGTCACTATGCCAA
CCGCACCCGTATGGATGATG

Product: integrase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Transposase; Integrase Family Protein; Site-Specific Recombinase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Bacteriophage Integrase; Phage Integrase; Mobilizable Transposon Int Protein; Tyrosine Recombinase XerD; Mobilizable Transposon Protein Int Protein; Prophage; Integrase/Recombinase; Tyrosine Recombinase XerD Subunit; Integrase/Transposase

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAISTGIYCRPEEWNSKKNEIKSVRENNRLREYLRLTEEAYNEILK
SQGVVSAEILKNHISLNNIHPTTLLQMGEWERERLKKHSEEIDSTSSCRSSMYYQKYLTDFLTSIGKKDIPLEEVTEDFG
KSYKAHLKKCKNFGASQTNHCLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMYDKRMELA
RRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERILSLYNTTDDEKPVFPLPNRDALW
FEVHELGITIGKEENLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMERRKEISSGE
KKK

Sequences:

>Translated_403_residues
MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAISTGIYCRPEEWNSKKNEIKSVRENNRLREYLRLTEEAYNEILK
SQGVVSAEILKNHISLNNIHPTTLLQMGEWERERLKKHSEEIDSTSSCRSSMYYQKYLTDFLTSIGKKDIPLEEVTEDFG
KSYKAHLKKCKNFGASQTNHCLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMYDKRMELA
RRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERILSLYNTTDDEKPVFPLPNRDALW
FEVHELGITIGKEENLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMERRKEISSGE
KKK
>Mature_403_residues
MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAISTGIYCRPEEWNSKKNEIKSVRENNRLREYLRLTEEAYNEILK
SQGVVSAEILKNHISLNNIHPTTLLQMGEWERERLKKHSEEIDSTSSCRSSMYYQKYLTDFLTSIGKKDIPLEEVTEDFG
KSYKAHLKKCKNFGASQTNHCLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMYDKRMELA
RRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERILSLYNTTDDEKPVFPLPNRDALW
FEVHELGITIGKEENLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMERRKEISSGE
KKK

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46982; Mature: 46982

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAISTGIYCRPEEWNSKKNEIKSVRE
CCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCHHHHCCCEEECCHHCCCHHHHHHHHHH
NNRLREYLRLTEEAYNEILKSQGVVSAEILKNHISLNNIHPTTLLQMGEWERERLKKHSE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHH
EIDSTSSCRSSMYYQKYLTDFLTSIGKKDIPLEEVTEDFGKSYKAHLKKCKNFGASQTNH
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
CLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMYDKRMELA
HHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHH
RRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERILSL
HHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHH
YNTTDDEKPVFPLPNRDALWFEVHELGITIGKEENLTYHQSRHSFGTFLISADIPIESIA
HCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCHHHCCCCCEEEEEECCCCHHHHH
KMMGHSNIRTTQGYARITDDKISKDMDKLMERRKEISSGEKKK
HHHCCCCCEECCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSTFSLLPYINRSKVKADGTTAILCRITIDGKQTAISTGIYCRPEEWNSKKNEIKSVRE
CCCCCCCCCCCCCCEECCCCCEEEEEEEEECCCHHHHCCCEEECCHHCCCHHHHHHHHHH
NNRLREYLRLTEEAYNEILKSQGVVSAEILKNHISLNNIHPTTLLQMGEWERERLKKHSE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHH
EIDSTSSCRSSMYYQKYLTDFLTSIGKKDIPLEEVTEDFGKSYKAHLKKCKNFGASQTNH
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
CLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMYDKRMELA
HHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHH
RRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERILSL
HHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHH
YNTTDDEKPVFPLPNRDALWFEVHELGITIGKEENLTYHQSRHSFGTFLISADIPIESIA
HCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCHHHCCCCCEEEEEECCCCHHHHH
KMMGHSNIRTTQGYARITDDKISKDMDKLMERRKEISSGEKKK
HHHCCCCCEECCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA