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The map label for this gene is xerC [H]

Identifier: 29349430

GI number: 29349430

Start: 5238754

End: 5239983

Strand: Reverse

Name: xerC [H]

Synonym: BT_4022

Alternate gene names: 29349430

Gene position: 5239983-5238754 (Counterclockwise)

Preceding gene: 29349442

Following gene: 29349429

Centisome position: 83.7

GC content: 46.91

Gene sequence:

>1230_bases
ATGAAAGTAGAAAAATTCAAGGTATTGCTCTACCTCAAAAAGAGCGGACCGGACAAGTCGGGAAAAGCTCCCATCATGGG
ACGCATTACGGTAAACAGGACAATGGCACAGTTCGGATGCAAACTGTCCTGCACTCCCGAATTATGGAATCCACGTGAAA
GCCGTCTGAACGGCAAAAGCAAGGAAGCGGTTGAGATCAATGCTAAGATTGAAAAGTTACTGTTAGCGGTAAACAATGCC
TTTGACAACCTTGTGAATCGCAAGGTTGATTTTGATGCTACCGATGTGAAAAACCTTTTTCAGGGCAGCATGGAAACGCA
GATGACGCTCATGCGAATGACGGATGTTGTCTGCGATGACCTCAAAGCCCGTATCGGCATAGACAGGGCAAAAGGGACTT
ATCCCGGTTATCACTATATGCGCCTGACAATCGGGGAGTTCATCGAGAACAAGTACAAGGTGAAAGATTTGGCATTTGGA
CAACTGACAGAGCAGTTCATCCACGACTATCAGTCTTTTGCCACGGAAGAGAAAGGCTATGCGATTGATACTGTCCGCCA
TCATCTTGCCATCCTGAAGAAGATATGCCGTCTGGCGTATAAGGATGGATATGCCGACAGAATCCACTTCCAGCATTTTA
CCTTACCAAAGAAGACGGAAACGACACCACGGGCATTGAGTCGTGAATCGTTTGAGAAAATCCGTGATGTGGAAATACCC
GCTTACCGCAAATCCCATATACTGGCAAGGGATATGTTTCTCTTCGGGTGCTACACCGGGGTCTGTTATGCGGATGTTGT
CTCGATTACCCACGAGAACCTATATACGGATGAGGACGGTGCTTTGTGGTTGAAGTATCGAAGAAAGAAAAACGAACTTC
GTGCCTGTGTGAAACTGTTACCGGAAGCGATTGCGCTGATTGAAAAATATCATAGTGAGGATAGGGACACCCTGTTCCCT
TTGCTGCATTGGTCAAATCTCAGACGACACATGAAAGCGTTGGCGGCACTGGCAGGCATCAAGGATGATTTGTGTTATCA
TCAGGCGAGGCACAGCTTCGCCTCGCTGATTACGCTTGAAGCAGGTGTGCCGATAGAAACCATCAGTAGGATGCTGGGAC
ATTCCGACATTTCCACAACACAGGTCTATGCCCGTGTCAGCCCGAAGAAACTTTTCGAGGACATGGACAAGTTCATAGAA
GCCACCAAAGATTTTCAATTAGTTCTTTAA

Upstream 100 bases:

>100_bases
AAAAGAAATCCTCACCGTTTTATTTGCACTCATACACAGTATTTTGCATATCAAGGAACGCTTATATGGCAAGTATTTTT
GCACTAAAAAGTATAAGCGT

Downstream 100 bases:

>100_bases
TCCTTTAATACAGAAAACTATATGCGAAGCACATTTTCACTTTTACCCTACATTAACCGCAGCAAAGTAAAGGCTGACGG
TACGACCGCCATACTCTGCC

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKVEKFKVLLYLKKSGPDKSGKAPIMGRITVNRTMAQFGCKLSCTPELWNPRESRLNGKSKEAVEINAKIEKLLLAVNNA
FDNLVNRKVDFDATDVKNLFQGSMETQMTLMRMTDVVCDDLKARIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFG
QLTEQFIHDYQSFATEEKGYAIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEIP
AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKYHSEDRDTLFP
LLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKFIE
ATKDFQLVL

Sequences:

>Translated_409_residues
MKVEKFKVLLYLKKSGPDKSGKAPIMGRITVNRTMAQFGCKLSCTPELWNPRESRLNGKSKEAVEINAKIEKLLLAVNNA
FDNLVNRKVDFDATDVKNLFQGSMETQMTLMRMTDVVCDDLKARIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFG
QLTEQFIHDYQSFATEEKGYAIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEIP
AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKYHSEDRDTLFP
LLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKFIE
ATKDFQLVL
>Mature_409_residues
MKVEKFKVLLYLKKSGPDKSGKAPIMGRITVNRTMAQFGCKLSCTPELWNPRESRLNGKSKEAVEINAKIEKLLLAVNNA
FDNLVNRKVDFDATDVKNLFQGSMETQMTLMRMTDVVCDDLKARIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFG
QLTEQFIHDYQSFATEEKGYAIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEIP
AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKYHSEDRDTLFP
LLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKFIE
ATKDFQLVL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=241, Percent_Identity=26.5560165975104, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47110; Mature: 47110

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEKFKVLLYLKKSGPDKSGKAPIMGRITVNRTMAQFGCKLSCTPELWNPRESRLNGKS
CCCCCEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHCCCEECCCCCCCCHHHHCCCCC
KEAVEINAKIEKLLLAVNNAFDNLVNRKVDFDATDVKNLFQGSMETQMTLMRMTDVVCDD
CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LKARIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFGQLTEQFIHDYQSFATEEKGY
HHHHHCCCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEIP
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHH
PEAIALIEKYHSEDRDTLFPLLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
AGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKFIEATKDFQLVL
CCCCHHHHHHHHCCCCCCHHHHEEECCHHHHHHHHHHHHHHCCCCEEEC
>Mature Secondary Structure
MKVEKFKVLLYLKKSGPDKSGKAPIMGRITVNRTMAQFGCKLSCTPELWNPRESRLNGKS
CCCCCEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHCCCEECCCCCCCCHHHHCCCCC
KEAVEINAKIEKLLLAVNNAFDNLVNRKVDFDATDVKNLFQGSMETQMTLMRMTDVVCDD
CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LKARIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFGQLTEQFIHDYQSFATEEKGY
HHHHHCCCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEIP
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHH
PEAIALIEKYHSEDRDTLFPLLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
AGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKFIEATKDFQLVL
CCCCHHHHHHHHCCCCCCHHHHEEECCHHHHHHHHHHHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]