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The map label for this gene is yhcF [H]

Identifier: 29346714

GI number: 29346714

Start: 1624126

End: 1624497

Strand: Reverse

Name: yhcF [H]

Synonym: BT_1304

Alternate gene names: 29346714

Gene position: 1624497-1624126 (Counterclockwise)

Preceding gene: 29346715

Following gene: 29346713

Centisome position: 25.95

GC content: 36.29

Gene sequence:

>372_bases
ATGAATTTTAAAGAAAGCAGAGCAATATATTTACAGATAGCCGACCGTATTTGTGATGACATCTTGTTGGGACAATACGA
GGAAGAAGGACGTATCCCTTCTGTCAGGGAATATGCGTCTATTGTAGAAGTGAATGCAAATACAGTAATGCGTTCGTATG
AGTATCTTCAGTCTCAGGAGGTGATTTACAATAAAAGAGGGATTGGCTTTTTTGTAGCGTCCGGGGCAAAGATGCTGATT
CATTCATTGCGAAAAGAGCAATTCTTAAAAGAAGAAGTCGGTAGCTTTTTCAGGCAACTTTATACACTTGGTATTTCTAT
CAAAGAAATAGAGAAGATGTATTATGAGTTTATACAAAGACAAAATCAATAA

Upstream 100 bases:

>100_bases
CATCTTATTCCCAATATTGACTATTATAAATTGGACATTGACTTATTTCCGCTTGAAAGAGTCGGAAGTAATCCATCGAA
TATAGAAAAGGAGGGTATGT

Downstream 100 bases:

>100_bases
TAAACAGATAAGATATGAAACGCACAACATATATAATAATAGGACTTTTTGTATTGGGCTTATTCTTTATACCTATCCTT
CTGCATACACCTGGCGGTGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MNFKESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLI
HSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQRQNQ

Sequences:

>Translated_123_residues
MNFKESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLI
HSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQRQNQ
>Mature_123_residues
MNFKESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLI
HSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQRQNQ

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14554; Mature: 14554

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
VIYNKRGIGFFVASGAKMLIHSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQR
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QNQ
CCC
>Mature Secondary Structure
MNFKESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
VIYNKRGIGFFVASGAKMLIHSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQR
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QNQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]