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The map label for this gene is cydB [H]

Identifier: 29346619

GI number: 29346619

Start: 1505065

End: 1506207

Strand: Reverse

Name: cydB [H]

Synonym: BT_1209

Alternate gene names: 29346619

Gene position: 1506207-1505065 (Counterclockwise)

Preceding gene: 29346620

Following gene: 29346611

Centisome position: 24.06

GC content: 41.29

Gene sequence:

>1143_bases
ATGTATATATTTCTACAACAATATTGGTGGCTGGTCGTTTCCTTGCTGGGGGCCATACTTGTATTTTTATTATTTGTGCA
GGGAGGAAATTCTTTATTGTTCTGTTTGGGTAAGACGGAGGAACATCGTAAGATGATGGTGAACTCTACTGGACGTAAGT
GGGAGTTTACGTTTACTACGCTGGTAACGTTCGGAGGTGCTTTCTTTGCTTCGTTCCCGTTGTTTTACAGTACCAGTTTC
GGTGGGGCTTACTGGCTTTGGATGATTATTCTTTTCAGTTTTGTGTTGCAGGCTGTGAGTTACGAGTTCCAGAGCAAGGC
AGGGAATTTGCTGGGTAAAAAGACCTATCAGACTTTCTTGGTAATTAATGGGGTTGTAGGACCTCTGTTGCTGGGTGGAG
CAGTTGCTACTTTCTTCACCGGTTCTGATTTCTATATCAATAAGGCGAATATGACGGATACGATTATGCCGGTTATCAGT
CATTGGGGAAATGGATGGCACGGACTGGACGCGTTGACTAATATCTGGAATGTTATTCTCGGACTGGCTGTATTCTTTTT
GGCGCGTGTGTTGGGTTCGCTCTATTTCATTAATAGTATAGCGGATAAGGAACTGACCGATAAATGTCGTCGTGCAGTAT
TGAATAATACTATTTTCTTCCTTGTATTCTTTTTGGTATTTGTAATCCGTACATTGGTTTCTGACGGTTTTGCTGTCAAT
CCGGATACATTGGAGGTTTATATGCAGCCTTATAAGTACTTTATCAACTTTATAGAAATGCCGGTAGTTCTGATCATCTT
CCTGATAGGTGTAGTATTGGTACTTTTTGGAATCGGTAAGACAGTTCTGAAAAAGACTTTCGACAAAGGAATCTGGTTTG
CAGGGATAGGTACAGTGCTGACAGTCTTGGCTTTGTTACTCGTAGCCGGATATAATAACACTGCTTATTATCCTTCATAT
ACGGACTTGCAAAGTTCGCTGACATTGGCTAACAGCTGTTCGAGTGAATTTACGCTGAAGACTATGGCTTATGTCTCTAT
TCTTGTTCCGTTTGTGATAGCTTATATATTCTATGCATGGCGTAGTATCGACCGCCATAAGATTACAGAGAAGGAGATGG
ATGAAGGAGGACATTCCTATTAA

Upstream 100 bases:

>100_bases
AATAATCGTAGCTGCTGACTGATTTATCAGCATGGTTATTACTTATTACCTATTACTTATTACCTGTTACTTATTACTTA
AAACTTAATACTTACATATT

Downstream 100 bases:

>100_bases
ATATAACTTTTCCTAAATGGAATAACCGATTGAATATTTTATTGGGATTTACCGGAAATTCCCCTTATATAAGGCAATTT
CTATGATATGGAGTTGACTT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MYIFLQQYWWLVVSLLGAILVFLLFVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTFTTLVTFGGAFFASFPLFYSTSF
GGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQTFLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVIS
HWGNGWHGLDALTNIWNVILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLVFVIRTLVSDGFAVN
PDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKTFDKGIWFAGIGTVLTVLALLLVAGYNNTAYYPSY
TDLQSSLTLANSCSSEFTLKTMAYVSILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHSY

Sequences:

>Translated_380_residues
MYIFLQQYWWLVVSLLGAILVFLLFVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTFTTLVTFGGAFFASFPLFYSTSF
GGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQTFLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVIS
HWGNGWHGLDALTNIWNVILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLVFVIRTLVSDGFAVN
PDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKTFDKGIWFAGIGTVLTVLALLLVAGYNNTAYYPSY
TDLQSSLTLANSCSSEFTLKTMAYVSILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHSY
>Mature_380_residues
MYIFLQQYWWLVVSLLGAILVFLLFVQGGNSLLFCLGKTEEHRKMMVNSTGRKWEFTFTTLVTFGGAFFASFPLFYSTSF
GGAYWLWMIILFSFVLQAVSYEFQSKAGNLLGKKTYQTFLVINGVVGPLLLGGAVATFFTGSDFYINKANMTDTIMPVIS
HWGNGWHGLDALTNIWNVILGLAVFFLARVLGSLYFINSIADKELTDKCRRAVLNNTIFFLVFFLVFVIRTLVSDGFAVN
PDTLEVYMQPYKYFINFIEMPVVLIIFLIGVVLVLFGIGKTVLKKTFDKGIWFAGIGTVLTVLALLLVAGYNNTAYYPSY
TDLQSSLTLANSCSSEFTLKTMAYVSILVPFVIAYIFYAWRSIDRHKITEKEMDEGGHSY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=391, Percent_Identity=26.8542199488491, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787213, Length=390, Percent_Identity=25.8974358974359, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42897; Mature: 42897

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]