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The map label for this gene is cydA [H]

Identifier: 29346620

GI number: 29346620

Start: 1506320

End: 1507882

Strand: Reverse

Name: cydA [H]

Synonym: BT_1210

Alternate gene names: 29346620

Gene position: 1507882-1506320 (Counterclockwise)

Preceding gene: 29346621

Following gene: 29346619

Centisome position: 24.09

GC content: 48.24

Gene sequence:

>1563_bases
ATGATTGAAAGTATTGACACCTCGCTGATCGATTGGTCGAGAGCCCAATTTGCGATGACAGCCATGTACCACTGGATTTT
CGTTCCGCTCACCCTCGGACTGGCTGTGGTGATGGGAATAATGGAGACGTTGTATTATAAAACAGGCAATGAATTTTGGA
AGCGGACAGCCAAGTTCTGGATGAAACTTTTCGGTATCAACTTCGCCATTGGTGTAGCGACAGGATTGATCCTGGAGTTT
GAGTTTGGTACGAACTGGAGTAATTATTCTTGGTTTGTAGGTGATATTTTCGGTGCACCGCTTGCTATTGAAGGTATTCT
GGCGTTCTTTATGGAAGCCACGTTTATCGCTGTCATGTTCTTCGGATGGGATAAGGTGAGCAAACGCTTCCACCTTGCTT
CTACCTGGCTGACTGGTCTGGGGGCTACGATCTCCGCTTGGTGGATTCTCGTAGCAAACGCATGGATGCAGCATCCGGTA
GGTATGGAGTTCAATCCCGATACAGTGCGTAATGAGATGGTTGATTTCTGGGCGGTGGCAACTTCGCCTGTAGCGGTCAA
CAAGTTCTTTCATACGGTATTGTCCGGATGGGTACTTGGTGGCGTGTTCGTTGTAGGAATCAGTTGTTGGTTTCTGCTGA
AGAAACGTAATCGCGAGTTTGCGCTTGCAAGCATAAAGATCGGTGCTATCTTCGGGCTTGTCTCTTCACTGCTGGCTGTA
TGGACGGGCGATGGTTCCGGCTATCAGATTGCACAGACCCAACCGATGAAACTGGCGGCTGTAGAGGGACTTTATGAAGG
AGGAACCAATGTAGGTCTGGTGGGAATAGGAATGCTGAACCCCGAAAAGAAGACTTACAATGATGGGAAAGACCCTTTCC
TGTTCCGGATTGAGATACCCAGTATGCTTTCGTTCCTTGCCGAGCGGGATGTGGACGGGTATGTCCCCGGAATTACCAAT
ATTATCGAAGGCGGCTATCAGCTGAAAGACGGTACGACTGCTTTGTCGGCAGCCGAAAAGATAGAGCGGGGTAAGACCGC
TATCGGAGCGCTGGCTGCTTATCGTGCAGCGAAGAGCGCCGGGCACGAGGAAGATGCCGCTGTTGCCTATCAGGTTTTGC
AGGAGAATATGCCATACTTCGGATACGGATATATTAAAGATGTGAATCAGCTGGTTCCGAATGTTCCTCTGAACTTCTAC
GCTTTCCGTATAATGGTTATCCTGGGCGGATATTTTATCCTTTTCTTCATAGTTGTGCTCTTCTTTATATATAAGAAAGA
TTTGAGTAAGATGCGCTGGATGCATTGGATCGCTCTGCTGACCATTCCTTTGGCTTACATTGCCGGACAGGCAGGATGGG
TGGTTGCCGAATGCGGTCGTCAGCCTTGGGCTATCCGCGATATGCTTCCTACATCGGCGGCTATCTCTAAATTGGATGTA
GGCTCCGTTCAGGCTACTTTCTTTATCTTCCTGATCTTGTTTACCGTAATGCTGATTGCGGAGATAGGGATTATGGTGAA
GGCGATTAAGAAAGGACCGGAAGAAGAGATAAGTAATAGGTAA

Upstream 100 bases:

>100_bases
CTACAGATGCCGACAAGGGTACGTATGTGGGAAATGAGCTGATACAGCGTGCACTTCCGGAGAAAACCACTGATTTTTAA
CTCTTAAACTACATAAGATT

Downstream 100 bases:

>100_bases
TAGGTATTAAGTAATAATCGTAGCTGCTGACTGATTTATCAGCATGGTTATTACTTATTACCTATTACTTATTACCTGTT
ACTTATTACTTAAAACTTAA

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MIESIDTSLIDWSRAQFAMTAMYHWIFVPLTLGLAVVMGIMETLYYKTGNEFWKRTAKFWMKLFGINFAIGVATGLILEF
EFGTNWSNYSWFVGDIFGAPLAIEGILAFFMEATFIAVMFFGWDKVSKRFHLASTWLTGLGATISAWWILVANAWMQHPV
GMEFNPDTVRNEMVDFWAVATSPVAVNKFFHTVLSGWVLGGVFVVGISCWFLLKKRNREFALASIKIGAIFGLVSSLLAV
WTGDGSGYQIAQTQPMKLAAVEGLYEGGTNVGLVGIGMLNPEKKTYNDGKDPFLFRIEIPSMLSFLAERDVDGYVPGITN
IIEGGYQLKDGTTALSAAEKIERGKTAIGALAAYRAAKSAGHEEDAAVAYQVLQENMPYFGYGYIKDVNQLVPNVPLNFY
AFRIMVILGGYFILFFIVVLFFIYKKDLSKMRWMHWIALLTIPLAYIAGQAGWVVAECGRQPWAIRDMLPTSAAISKLDV
GSVQATFFIFLILFTVMLIAEIGIMVKAIKKGPEEEISNR

Sequences:

>Translated_520_residues
MIESIDTSLIDWSRAQFAMTAMYHWIFVPLTLGLAVVMGIMETLYYKTGNEFWKRTAKFWMKLFGINFAIGVATGLILEF
EFGTNWSNYSWFVGDIFGAPLAIEGILAFFMEATFIAVMFFGWDKVSKRFHLASTWLTGLGATISAWWILVANAWMQHPV
GMEFNPDTVRNEMVDFWAVATSPVAVNKFFHTVLSGWVLGGVFVVGISCWFLLKKRNREFALASIKIGAIFGLVSSLLAV
WTGDGSGYQIAQTQPMKLAAVEGLYEGGTNVGLVGIGMLNPEKKTYNDGKDPFLFRIEIPSMLSFLAERDVDGYVPGITN
IIEGGYQLKDGTTALSAAEKIERGKTAIGALAAYRAAKSAGHEEDAAVAYQVLQENMPYFGYGYIKDVNQLVPNVPLNFY
AFRIMVILGGYFILFFIVVLFFIYKKDLSKMRWMHWIALLTIPLAYIAGQAGWVVAECGRQPWAIRDMLPTSAAISKLDV
GSVQATFFIFLILFTVMLIAEIGIMVKAIKKGPEEEISNR
>Mature_520_residues
MIESIDTSLIDWSRAQFAMTAMYHWIFVPLTLGLAVVMGIMETLYYKTGNEFWKRTAKFWMKLFGINFAIGVATGLILEF
EFGTNWSNYSWFVGDIFGAPLAIEGILAFFMEATFIAVMFFGWDKVSKRFHLASTWLTGLGATISAWWILVANAWMQHPV
GMEFNPDTVRNEMVDFWAVATSPVAVNKFFHTVLSGWVLGGVFVVGISCWFLLKKRNREFALASIKIGAIFGLVSSLLAV
WTGDGSGYQIAQTQPMKLAAVEGLYEGGTNVGLVGIGMLNPEKKTYNDGKDPFLFRIEIPSMLSFLAERDVDGYVPGITN
IIEGGYQLKDGTTALSAAEKIERGKTAIGALAAYRAAKSAGHEEDAAVAYQVLQENMPYFGYGYIKDVNQLVPNVPLNFY
AFRIMVILGGYFILFFIVVLFFIYKKDLSKMRWMHWIALLTIPLAYIAGQAGWVVAECGRQPWAIRDMLPTSAAISKLDV
GSVQATFFIFLILFTVMLIAEIGIMVKAIKKGPEEEISNR

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=522, Percent_Identity=42.1455938697318, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1787212, Length=518, Percent_Identity=41.5057915057915, Blast_Score=388, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57951; Mature: 57951

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIESIDTSLIDWSRAQFAMTAMYHWIFVPLTLGLAVVMGIMETLYYKTGNEFWKRTAKFW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MKLFGINFAIGVATGLILEFEFGTNWSNYSWFVGDIFGAPLAIEGILAFFMEATFIAVMF
HHHHHCHHHHHHHHCEEEEEECCCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHH
FGWDKVSKRFHLASTWLTGLGATISAWWILVANAWMQHPVGMEFNPDTVRNEMVDFWAVA
HCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
TSPVAVNKFFHTVLSGWVLGGVFVVGISCWFLLKKRNREFALASIKIGAIFGLVSSLLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
WTGDGSGYQIAQTQPMKLAAVEGLYEGGTNVGLVGIGMLNPEKKTYNDGKDPFLFRIEIP
CCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEHH
SMLSFLAERDVDGYVPGITNIIEGGYQLKDGTTALSAAEKIERGKTAIGALAAYRAAKSA
HHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHC
GHEEDAAVAYQVLQENMPYFGYGYIKDVNQLVPNVPLNFYAFRIMVILGGYFILFFIVVL
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FFIYKKDLSKMRWMHWIALLTIPLAYIAGQAGWVVAECGRQPWAIRDMLPTSAAISKLDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCHHHHCCCHHHHHHCCC
GSVQATFFIFLILFTVMLIAEIGIMVKAIKKGPEEEISNR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MIESIDTSLIDWSRAQFAMTAMYHWIFVPLTLGLAVVMGIMETLYYKTGNEFWKRTAKFW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MKLFGINFAIGVATGLILEFEFGTNWSNYSWFVGDIFGAPLAIEGILAFFMEATFIAVMF
HHHHHCHHHHHHHHCEEEEEECCCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHH
FGWDKVSKRFHLASTWLTGLGATISAWWILVANAWMQHPVGMEFNPDTVRNEMVDFWAVA
HCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
TSPVAVNKFFHTVLSGWVLGGVFVVGISCWFLLKKRNREFALASIKIGAIFGLVSSLLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
WTGDGSGYQIAQTQPMKLAAVEGLYEGGTNVGLVGIGMLNPEKKTYNDGKDPFLFRIEIP
CCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEHH
SMLSFLAERDVDGYVPGITNIIEGGYQLKDGTTALSAAEKIERGKTAIGALAAYRAAKSA
HHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHC
GHEEDAAVAYQVLQENMPYFGYGYIKDVNQLVPNVPLNFYAFRIMVILGGYFILFFIVVL
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FFIYKKDLSKMRWMHWIALLTIPLAYIAGQAGWVVAECGRQPWAIRDMLPTSAAISKLDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCHHHHCCCHHHHHHCCC
GSVQATFFIFLILFTVMLIAEIGIMVKAIKKGPEEEISNR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]