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The map label for this gene is yrfF

Identifier: 29144279

GI number: 29144279

Start: 4162923

End: 4165055

Strand: Reverse

Name: yrfF

Synonym: t4011

Alternate gene names: 29144279

Gene position: 4165055-4162923 (Counterclockwise)

Preceding gene: 229220623

Following gene: 29144278

Centisome position: 86.92

GC content: 54.99

Gene sequence:

>2133_bases
ATGAGCACCATTCTGATTTTTATAGCTGCTTTGCTGGCCTGCTCTCTACTGGCAATATGGCGGTTCCGGGTAAAGTCCAG
ACGAGGGAGCTTACCGTGGTTCAGCGCCTTTCAGGACGCGCAAACGCGTAAACTGTTGCCCGAAGAGCGCAGCGCGGTAG
AAAACTATCTCGATAACCTTAGCCAGATCCAGCAAGTTCCGGGGCCGACAGGCGCCAGTGCTGCGCCCATCTCGCTGACG
CTGAACGCGGAAAGCAACAGTGTCGTGATACTGACCCACTCCATCACCCGCTACGGCATTACCACTGACGATCCTAATAA
ATGGCGCTACTACCTCGACTCCGTCGAAGTCCATCTGCCGCCTTTCTGGGAACAGTACATCAATGATGAAAACAACGTTG
AGCTAATCCTCACGGATACGCTGCCGCTGGTGATCTCTTTAAACGGCCATACGCTGCAAGAGTATATGCAGGAGTCGCGC
GGCTACGCGCTACAGAATACGGCCTCTACGCAGGCGTCGATTCGCGGCGAAGAGAGCGAGCAGATTGAGCTGTTGAACAT
CCGTCAGGAGACCCACGAAGAATATGCGCTCAGCCGCCCGGCTGGCTTGCGCGAAGCATTGTTAATCGTCGCCTCCTTTT
TGTTATTCTTTTTCTGTCTGATAACGCCAGACGTTTTTGTACCGTGGATGATAGGCGGCGCGATCCTGCTGCTGGCAGCC
GGACTTTGGGGGCTTTTTGCGCCGCCGTCGAAAAGCGCGCTGCGGGAAATTCACTGTCTGCGGGGAACGCCCCGCCGCTG
GGGACTGTTTGGGGAGAATAATCAGGAGCAGATTAACAATATTTCCCTGGGCATCATCGACCTTATTTACCCTGCCCACT
GGCAACCTTACATTACGCAGGATCTTGGGCAACAAACGGATATTGATATTTACCTTGATCGCCATGTCGCCCGCCAGGGC
CGTTTTTTATCCCTGCATGATGAAGTGAAAAACTTCCCGTTGCAGCACTGGTTACGCAGCACTGTTATTGCTATCGGTTC
GCTGCTGGTGTTGTTTATGCTGCTGTTCTGGATCCCGTTGGATATGCCAATCAAGTTCACGCTATCGTGGATGAAAGGCG
CGCAAACCATTGAAGCGACAACGGTAAAACAGCTTGAAAAGGCTGGCGTACGGGTGGGCGATACGCTGCACCTGAGCGGT
AAAGGAATGTGTAATATTCATTCCGGGGCGACCTGGAGCGGGCAGTCTAACTCACCGTTTATGCCGTTCGATTGCTCGCA
AATCATCTGGAATGACGCGCCTGCGCTACCGCTGCCGGAATCAGATCTGGTGAATAAAGCGATGGCGCTAAGCCAGGCGG
TAAATCGTCAGCTCCATCCAAAACCCGAAGACGACTCGCGCGTAAGCGCATCTTTACGCTCCGCGATCCAAAAATCGGGC
ATGGTATTATTAGATGACTTTGGCGATATTGTTCTGAAAACCGCTGATTTGTGCGCGGCGGAAGACGAGTGCGTGCGCCT
GAAAAATGCGCTGGTTAATCTCGGTAACAGTAAGGACTGGAACGCGCTGGTGAAACGCGCGAACGCCGGCAAACTGGACG
GCGTCAACGTGCTGCTACGCCCCGTAAGCGCAGAGTCGCTGGAAAATCTGGTCACGACCTCAACGGCGCCGTTTATTTCT
CGCGAGACCGCGCGTGCCGCCCAGTCGCTGAATAGCCCCGCTCCCGGCGGATTCCTGATCGCCAGCGATGAAGGCAGCGA
ACTGGTTGATCAGGCCTGGCCGTCAACGCCGCTGTATGACTATCCCGCGCAGGAACAGTGGAGCGCCTTCCAGCGTCTGG
CGCAAACGCTCATGCAGACGCCATTTAGCGCCGAGGGCATTGTCACCAGCGTGTATACCGATGCCAACGGCACGCAGCAT
ATCAGCCTGCATCGTATCCCCGATAAATCCGGCTGGTGGCGTTACCTCGGCACCACGCTGCTGATGCTGGCAATGATAGT
GAGCGCGGTCTACAACGGCATTCAGGCGTTCAGGCGTTATCAACGCCACCGTACCCGTATGGCGGACATCCAGGAATACT
ATGAAAGCTGCCTCAATCCCAGGTTAACCGTCTCTCCGGAAAATCTCATCTGA

Upstream 100 bases:

>100_bases
AAGTTCAACTCCACGCTTGCCGATAGCCAACCACAGAAAAATGTTTATTGGACAGGGTGCGACTGACCACGCCTGACAGA
CTTAGTAAGATGGGGAAAGC

Downstream 100 bases:

>100_bases
TAGCGCCGCCGTGCGACAGGGTATGCTACCCTGTCGCGCAAATTGCGTTACCCTGGAGTTCCCCATGCATATTGATATTG
ACTGGCAAAACGTGGATACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 709

Protein sequence:

>710_residues
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLT
LNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQG
RFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSG
KGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFIS
RETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQH
ISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI

Sequences:

>Translated_710_residues
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLT
LNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQG
RFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSG
KGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFIS
RETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQH
ISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
>Mature_709_residues
STILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTL
NAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRG
YALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAAG
LWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGR
FLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGK
GMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSGM
VLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISR
ETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHI
SLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the igaA family

Homologues:

Organism=Escherichia coli, GI1789801, Length=710, Percent_Identity=83.943661971831, Blast_Score=1184, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IGAA_SALTI (P58721)

Other databases:

- EMBL:   AL627281
- EMBL:   AE014613
- RefSeq:   NP_458409.1
- RefSeq:   NP_807621.1
- ProteinModelPortal:   P58721
- GeneID:   1070962
- GeneID:   1250518
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t4011
- KEGG:   sty:STY4301
- HOGENOM:   HBG417125
- OMA:   ISLNGHS
- ProtClustDB:   CLSK880647
- BioCyc:   SENT209261:T4011-MONOMER
- BioCyc:   SENT220341:STY4301-MONOMER
- InterPro:   IPR010771
- ProDom:   PD147088

Pfam domain/function: PF07095 IgaA

EC number: NA

Molecular weight: Translated: 79367; Mature: 79235

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb16c3b0)-; HASH(0x1274baf8)-; HASH(0x11e2eddc)-; HASH(0x12c3b108)-; HASH(0x11f7b36c)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRKLLPEERSAVENYLDNL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLP
HHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCEECCCCCCCCCCCEEEEECEEEECC
PFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESE
HHHHHHCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHCCCEEECCCCCHHHCCCCCCC
QIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQ
HHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
DLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPL
HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPF
CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
MPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLR
CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEE
PVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYD
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
YPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTL
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCH
>Mature Secondary Structure 
STILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRKLLPEERSAVENYLDNL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLP
HHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCEECCCCCCCCCCCEEEEECEEEECC
PFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESE
HHHHHHCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHCCCEEECCCCCHHHCCCCCCC
QIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQ
HHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
DLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPL
HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPF
CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
MPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLR
CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEE
PVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYD
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
YPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTL
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504