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The map label for this gene is hybB [H]

Identifier: 29143413

GI number: 29143413

Start: 3151873

End: 3153051

Strand: Reverse

Name: hybB [H]

Synonym: t3069

Alternate gene names: 29143413

Gene position: 3153051-3151873 (Counterclockwise)

Preceding gene: 29143414

Following gene: 29143412

Centisome position: 65.8

GC content: 52.67

Gene sequence:

>1179_bases
ATGAGTCATGATCCAAAACCGCTGGGCGGAAAAATCATCAGTAAACCGGTCATTATTTTTGGACCGTTAATCGTCCTGTG
TATGCTCCTTATCGTGAAGCGTCTGGTCTTCGGGTTGGGCTCCGTTTCCGACCTGAACGGCGGTTTCCCGTGGGGCGTCT
GGATTGCCTTTGACCTGTTGATCGGCACCGGCTTTGCCTGCGGCGGTTGGGCGTTGGCATGGGCGGTGTATGTCTTTAAC
CGTGGGCAATACCATCCGTTGGTGCGCCCGGCATTGCTGGCAAGCTTGTTTGGTTACTCGCTGGGCGGCCTGTCGATCAC
TATCGACGTCGGTCGTTACTGGAACCTGCCGTACTTCTACATTCCAGGTCACTTCAACGTGAACTCGGTACTGTTTGAGA
CGGCGGTCTGTATGACCATCTACATCGGCGTGATGGCGCTGGAGTTTGCGCCTGCCTTGTTTGAACGTCTGGGCTGGAAA
GTGTCGCTCAAGCGTCTGAATAAGGTGATGTTCTTTATTATCGCGCTGGGCGCGCTGCTGCCGACGATGCACCAGTCCTC
AATGGGGTCATTGATGATCTCGGCGGGCTATAAAGTGCATCCGCTATGGCAAAGCTATGAAATGCTGCCGCTGTTCTCGG
TTCTGACCGCGTTTATCATGGGCTTCTCCATTGTCATATTTGAGGGGGCGCTGGTTCAGGCAGGCCTGAAAGGAAACGGT
CCGGATGAGAAAAATTTGTTTGTTAAGCTGACGAATACCATCAGCGTGCTGCTGGCGATTTTCGTCGTCCTGCGCTTTGG
CGAACTGATTTATCGCGACAAGCTGTCCTATGCGTTTGCCGGCGATTTTTACTCCGCTATGTTCTGGATTGAAGTCGTCC
TGATGGTCTTCCCGTTAGTGGTGCTGCGTGTGGCGAAACTGCGTAATGACTCTCGTATGCTGTACCTGTCGGCGCTGAGC
GCGCTGTTGGGTTGCGCGACGTGGCGTCTGACCTATTCGCTGGTGGCATTCAACCCGGGTGGCGGCTACCACTACTTCCC
AACCTGGGAAGAATTGTTGATTTCTATTGGTTTTGTGGCTATTGAGATTTGTGCATACATCGTACTCATTCGTCTACTGC
CGATACTTCCTCCTTTAAAACAAAACGATCATAATCGTCATGAGGCGAGCAAAGCATGA

Upstream 100 bases:

>100_bases
CTTTATAAAGGCATGATACTACCCCTGGCTGCGCTGGCGGGCTTAACCGTGCTGGTTCGTCGTAATAGCAAAAACGACCA
TCACGATGGAGGAGACGATC

Downstream 100 bases:

>100_bases
GCCAGAGAATTACTATTGATCCGGTAACCCGTATTGAGGGTCATTTACGCATTGACTGCGAAATTGAGAACGGCGTCGTA
TCCAAAGCATGGGCGTCCGG

Product: hydrogenase 2 b cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFN
RGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAFIMGFSIVIFEGALVQAGLKGNG
PDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLSYAFAGDFYSAMFWIEVVLMVFPLVVLRVAKLRNDSRMLYLSALS
ALLGCATWRLTYSLVAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA

Sequences:

>Translated_392_residues
MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFN
RGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAFIMGFSIVIFEGALVQAGLKGNG
PDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLSYAFAGDFYSAMFWIEVVLMVFPLVVLRVAKLRNDSRMLYLSALS
ALLGCATWRLTYSLVAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
>Mature_391_residues
SHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNR
GQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKV
SLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAFIMGFSIVIFEGALVQAGLKGNGP
DEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLSYAFAGDFYSAMFWIEVVLMVFPLVVLRVAKLRNDSRMLYLSALSA
LLGCATWRLTYSLVAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA

Specific function: Probable b-type cytochrome [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=392, Percent_Identity=96.1734693877551, Blast_Score=747, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 43616; Mature: 43484

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLL
CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
IGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFY
HHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCEECCCEEE
IPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLKRLNKVMFFIIALGALL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
PTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAFIMGFSIVIFEGALVQAGLKGNG
HHHHHHHHCCEEEECCCEEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLSYAFAGDFYSAMFWIEVVLMVFPLV
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VLRVAKLRNDSRMLYLSALSALLGCATWRLTYSLVAFNPGGGYHYFPTWEELLISIGFVA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
IEICAYIVLIRLLPILPPLKQNDHNRHEASKA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLL
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
IGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFY
HHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCEECCCEEE
IPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLKRLNKVMFFIIALGALL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
PTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAFIMGFSIVIFEGALVQAGLKGNG
HHHHHHHHCCEEEECCCEEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLSYAFAGDFYSAMFWIEVVLMVFPLV
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VLRVAKLRNDSRMLYLSALSALLGCATWRLTYSLVAFNPGGGYHYFPTWEELLISIGFVA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
IEICAYIVLIRLLPILPPLKQNDHNRHEASKA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8021226; 9278503 [H]