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The map label for this gene is ygcI [H]

Identifier: 29143196

GI number: 29143196

Start: 2914463

End: 2915188

Strand: Reverse

Name: ygcI [H]

Synonym: t2841

Alternate gene names: 29143196

Gene position: 2915188-2914463 (Counterclockwise)

Preceding gene: 29143197

Following gene: 29143195

Centisome position: 60.83

GC content: 54.27

Gene sequence:

>726_bases
ATGAAGGAATATCTGGTTTTTCAGCTTTATGCGCCGCTGGCGTCGTGGGGGGAGGAAGCGTCTGGCGAGATTCGCCACTC
AGCTACGGTTCCCACGCGCTCTGCGCTATTGGGTCTGCTTGCCGCAGCGTTAGGAATTCGTCGCGACGAAGAAGCGCGGC
TGAATAACTTTAACCGGCACTATCATCTGGCGGTGCACGCGTTGGCTTCACAAGATCGCTGGTTGCGGGATTATCACACG
GTTAGCGCGCCGCGAGAAAACAAAAAGTATCGTTATTACACGCGCCGGGATGAACTGACTCTCGCGTCGGATGAAGTGGG
AACGCTTATCTCGCAGCGAGAGTATCGCTGCGATGGCTACTGGCATGTGGCAATAAGCGCCACGCCTGATGCACCATATT
CGCTTAGCGAATTGCGAGAGGCGCTGCTGACACCGCATTTTCCGCTCTATCTGGGGAGAAAATCCTGCCCGCTGGCGTTA
CCGTTAGCGGCGCGTTTAATGACCGGCACCTTAAAAGAGGTATTCACTCATGCTGTGGAGGAGATTTCCGCAGCGGAATT
AAGTGGATTTACCCTGCGTGAGGGTATTTGTTATTGGGATGATCCTGATGAGGAGAGTCTGGTCTGGCAACAAAAGCAGC
ATAGCAATAACCAGCCAGTTAGCCGCCAACGCTGGCAGTTTGGCGGCTACACCCGCTTCAATGGGCCGTTGCAGGAGAGA
ACATAA

Upstream 100 bases:

>100_bases
ATATGGAAACTGTGCAGACGATTATCGTGAGTTGAACGTTCAGGAAGGTACGGGATCTCTGGCGGAATTACTGGCCTTTG
TTAGCCAGTAAGGATGAATA

Downstream 100 bases:

>100_bases
TGTATCTTTCTCGTATTCAACTCCGGTTTAATAATTTGCGACCGGAGATGTTGGCAAAGTGGAATTCAGCCAGGCCTTAT
GCCAGCCACCAGTGGTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHT
VSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLAL
PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
T

Sequences:

>Translated_241_residues
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHT
VSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLAL
PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
T
>Mature_241_residues
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHT
VSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLAL
PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
T

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=169, Percent_Identity=41.4201183431953, Blast_Score=91, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 27685; Mature: 27685

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRH
CCCEEEEHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCE
YHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGY
EEEEEEEHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHCCCCCCE
WHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVE
EEEEEEECCCCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
HHHHHHHCCCCHHCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCEEECCCCCCCC
T
C
>Mature Secondary Structure
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRH
CCCEEEEHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCE
YHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGY
EEEEEEEHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHCCCCCCE
WHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVE
EEEEEEECCCCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
HHHHHHHCCCCHHCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCEEECCCCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]