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The map label for this gene is ygcJ [H]

Identifier: 29143197

GI number: 29143197

Start: 2915198

End: 2916262

Strand: Reverse

Name: ygcJ [H]

Synonym: t2842

Alternate gene names: 29143197

Gene position: 2916262-2915198 (Counterclockwise)

Preceding gene: 29143198

Following gene: 29143196

Centisome position: 60.86

GC content: 48.73

Gene sequence:

>1065_bases
TTGATAATGACAACTTTTATTCAACTGCATTTATTGACTGCTTATGCGCCCGCTAACCTGAATCGTGATGAGTCTGGCAG
ACCGAAGACCGCGTTTATGGGAGGAGTTGAGCGTTTACGCGTATCGTCGCAAAGTCTGAAGCGTGCCTGGCGGGTGTCGG
AAACTTTTGAAGCGGCAATGGATGGCTTTATGGGTAAGCGTACTCGTCGAATTGGCGTGGATTATGTTTATCGTCCGATG
AAAGATGCCGGAATTGAAGAAAAAATTGCTAAGAGTTCGTCTGAGTTAATCGCTAAGCAATTTGGCAAGCTTAAAAGTGA
TAAAGATGCGAAACCGGAAAAAAATCTCGAAATTGAGCAGATCGTTCACGTCAGTAACCATGAAATTAGTTTGATTAAAC
AACTGGTTGATACGCTAATTGCCGACAAACGCGAACCTAACGATGAAGAAGTGAAGCTTCTGCGCAAAGAACAGCGTAGC
GTAGATATGGCGCTGTTTGACCGTATGCTGGCGTCATCGCCTGAGTTCAACGTCGAGGCTGCTTGTCAGGTATCCCATGC
GTTGGGCGTAAGTGCCGTGACCGTTGAGTCTGATTTTTTCACCGCCGTTGACGATCTGAATAATAAAGAGGAAGACGCAG
GTTCCGGGCATATGGGCGAGCAGGGTTTTGCCTCGGCGCTTTTCTATACCTATGTCTGTATCAGCCGCGATCTGCTGGTG
GAAAACCTGGGTGGTAACGAAGAACTGGCGAAGCGTACTATCGCGGCACTCACTGAAACAGCGTTAACCGTCTCGCCAAC
CGGTAAACAAAACAGCTTCGCTTCTCGTGCCTATGCCACCTATGCGTTGGCCGAAGTCGGGCAAAAACAACCGCGTTCTC
TGGCGGCGGCATTTTTCCAGCCGGTACGCGATACCGATCAAATTCCTGCGGCAATAACCCGTTTAAAACAGCAGCGCGCC
AGCTTCGATAGCGTATATGGAAACTGTGCAGACGATTATCGTGAGTTGAACGTTCAGGAAGGTACGGGATCTCTGGCGGA
ATTACTGGCCTTTGTTAGCCAGTAA

Upstream 100 bases:

>100_bases
CATCAGCCGGAATTCCGTAACCCCTTTGAACGAAGTCGCATCCGTTGGGCGAACGAATATCTTTCCACGTCGCGTGGCAA
ATAATCATTTTTAGAAGGAT

Downstream 100 bases:

>100_bases
GGATGAATAATGAAGGAATATCTGGTTTTTCAGCTTTATGCGCCGCTGGCGTCGTGGGGGGAGGAAGCGTCTGGCGAGAT
TCGCCACTCAGCTACGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPM
KDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRS
VDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLV
ENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRA
SFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ

Sequences:

>Translated_354_residues
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPM
KDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRS
VDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLV
ENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRA
SFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>Mature_354_residues
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPM
KDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRS
VDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLV
ENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRA
SFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=316, Percent_Identity=29.1139240506329, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 39167; Mature: 39167

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAM
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQ
HHHHHHHHHHHCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
IVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEA
HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLV
HHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQ
HCCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
PVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
HHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAM
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQ
HHHHHHHHHHHCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
IVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEA
HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLV
HHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQ
HCCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
PVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
HHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]